Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1089 ATGATGTTTGGTATTGAATTTTCTGTTTCTTCGAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCTACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTCAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCAAATCTCAAACCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAAGAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTCGTGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCTGAGATGGGTTTGAGCCAATTCATTGGCAATAATAGTCCGGGATAA 1275 38.59 MMFGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNSINQSLFNSQLQDHNFQSSPAFPQFLPPYNNLYQISNQILSLNNKNNASETATMNLTLSSSANKQEQAYNLPSFCSGRGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLRDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNSPG 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26345648 26349130 + CcPI632755_04g010890.1 Cco04g1089 176314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1089 424 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Cco04g1089 424 MobiDBLite consensus disorder prediction 12 68 - -
Cco04g1089 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 348 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco04g1089 424 FunFam protein indeterminate-domain 12-like 62 131 - -
Cco04g1089 424 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 121 155 - -
Cco04g1089 424 Gene3D Classic Zinc Finger 139 217 - -
Cco04g1089 424 SUPERFAMILY beta-beta-alpha zinc fingers 82 180 IPR036236 -
Cco04g1089 424 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Cco04g1089 424 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 159 183 - -
Cco04g1089 424 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 186 224 - -
Cco04g1089 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Cco04g1089 424 MobiDBLite consensus disorder prediction 34 56 - -
Cco04g1089 424 MobiDBLite consensus disorder prediction 12 33 - -
Cco04g1089 424 Gene3D Classic Zinc Finger 63 136 - -
Cco04g1089 424 SMART c2h2final6 160 180 IPR013087 -
Cco04g1089 424 SMART c2h2final6 83 105 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1089 Cco-Chr4:26345648 Cco09g0065 Cco-Chr9:563250 3.10E-87 dispersed
Cco02g0254 Cco-Chr2:2358187 Cco04g1089 Cco-Chr4:26345648 1.20E-86 transposed
Cco02g1121 Cco-Chr2:16329908 Cco04g1089 Cco-Chr4:26345648 6.60E-90 transposed
Cco03g1769 Cco-Chr3:32366608 Cco04g1089 Cco-Chr4:26345648 5.90E-86 transposed
Cco09g0587 Cco-Chr9:5188438 Cco04g1089 Cco-Chr4:26345648 3.10E-83 transposed
Cco10g2030 Cco-Chr10:33714856 Cco04g1089 Cco-Chr4:26345648 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59038 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1089 K25870 - csv:101221389 600.512