Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1089 | ATGATGTTTGGTATTGAATTTTCTGTTTCTTCGAATTCTAATGGAGAATTTGCTGATCATCAACAACAAAATTCTCAACTTTATCATCATCTTCCTCATAACCCTAACCCTAACCCTAATCCAAATCTTGATTCTTCTTTTCCTCCTCCTACTCTCCCCAAGAAGAAGAGAAACTTGCCAGGAAAACCAGATCCAGATGCTGAGGTAATTGCTTTATCTCCCAACACTTTAATGGCTACAAACAGATTCATATGTGAAATATGCAATAAAGGGTTTCAAAGGGACCAAAATTTGCAACTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAGGCAAAGAAGCAATAAAGAAGTAGTGAAGAAGAAAGTATATATTTGCCCTGAAAAATGTTGTGTTCATCATGATCCAAGCAGAGCCCTTGGGGACCTAACTGGAATTAAAAAACATTTCAGTAGAAAACATGGGGAGAAAAAATGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAGACTTGTGGTACTAGAGAGTACAAATGTGACTGTGGAACACTATTTTCCAGGAAAGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCTGTTACAGCAGCAAATTCAAGACTTAATTTCATTGCCAATAATAATAATAATTCAATCAACCAATCTCTTTTCAATTCCCAATTACAAGACCATAATTTTCAATCATCACCTGCTTTCCCCCAATTTCTTCCACCCTATAATAATCTCTACCAAATCTCAAACCAAATTTTGAGTTTGAATAACAAAAACAATGCTTCAGAAACAGCCACCATGAACCTCACTCTGTCCTCCTCTGCCAACAAACAAGAACAAGCTTATAACTTGCCATCGTTTTGCTCCGGTCGTGGTGGCGGAGGGATGTCGGCGACGGCACTGCTGCTGAAAGCGGCGCAATTGGGGTCGACAAAGAGTAAAGATAACTCATTTTCTTCAGGGAGTAACAGTGTGGGAGTAGTTATGAGTTCATCTCCAAATAATATTTCATTTGAGAGTGGTAATTGTAATTATTATGGGGGAAAGGGAGATGGGTTGAGGGATTTTTTTGGGAGGAAGGAGGGAGAAGGGAATGATCATCAGTTGATTATTCCATTAATGGAGATGACCAAATTTGCTAACTCTATGAGCTCTGAGATGGGTTTGAGCCAATTCATTGGCAATAATAGTCCGGGATAA | 1275 | 38.59 | MMFGIEFSVSSNSNGEFADHQQQNSQLYHHLPHNPNPNPNPNLDSSFPPPTLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVKKKVYICPEKCCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTAANSRLNFIANNNNNSINQSLFNSQLQDHNFQSSPAFPQFLPPYNNLYQISNQILSLNNKNNASETATMNLTLSSSANKQEQAYNLPSFCSGRGGGGMSATALLLKAAQLGSTKSKDNSFSSGSNSVGVVMSSSPNNISFESGNCNYYGGKGDGLRDFFGRKEGEGNDHQLIIPLMEMTKFANSMSSEMGLSQFIGNNSPG | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26345648 | 26349130 | + | CcPI632755_04g010890.1 | Cco04g1089 | 176314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1089 | 424 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 138 | 217 | - | - | |
Cco04g1089 | 424 | MobiDBLite | consensus disorder prediction | 12 | 68 | - | - | |
Cco04g1089 | 424 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 34 | 348 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco04g1089 | 424 | FunFam | protein indeterminate-domain 12-like | 62 | 131 | - | - | |
Cco04g1089 | 424 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 121 | 155 | - | - | |
Cco04g1089 | 424 | Gene3D | Classic Zinc Finger | 139 | 217 | - | - | |
Cco04g1089 | 424 | SUPERFAMILY | beta-beta-alpha zinc fingers | 82 | 180 | IPR036236 | - | |
Cco04g1089 | 424 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 85 | 105 | IPR013087 | - | |
Cco04g1089 | 424 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 159 | 183 | - | - | |
Cco04g1089 | 424 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 186 | 224 | - | - | |
Cco04g1089 | 424 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 83 | 105 | IPR013087 | - | |
Cco04g1089 | 424 | MobiDBLite | consensus disorder prediction | 34 | 56 | - | - | |
Cco04g1089 | 424 | MobiDBLite | consensus disorder prediction | 12 | 33 | - | - | |
Cco04g1089 | 424 | Gene3D | Classic Zinc Finger | 63 | 136 | - | - | |
Cco04g1089 | 424 | SMART | c2h2final6 | 160 | 180 | IPR013087 | - | |
Cco04g1089 | 424 | SMART | c2h2final6 | 83 | 105 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1089 | Cco-Chr4:26345648 | Cco09g0065 | Cco-Chr9:563250 | 3.10E-87 | dispersed | |
Cco02g0254 | Cco-Chr2:2358187 | Cco04g1089 | Cco-Chr4:26345648 | 1.20E-86 | transposed | |
Cco02g1121 | Cco-Chr2:16329908 | Cco04g1089 | Cco-Chr4:26345648 | 6.60E-90 | transposed | |
Cco03g1769 | Cco-Chr3:32366608 | Cco04g1089 | Cco-Chr4:26345648 | 5.90E-86 | transposed | |
Cco09g0587 | Cco-Chr9:5188438 | Cco04g1089 | Cco-Chr4:26345648 | 3.10E-83 | transposed | |
Cco10g2030 | Cco-Chr10:33714856 | Cco04g1089 | Cco-Chr4:26345648 | 1.40E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59038 | PF12171 | zf-C2H2_jaz | 6.00E-05 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1089 | K25870 | - | csv:101221389 | 600.512 |