Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1093 ATGAAGTTTCGTGGTCTTCTTTCTAATTGTTGTTACTCTCCATCGCCGACTGCCATGGAAAATAGCCGCCACGATAGACAAGACAATGAGAGTTTTCGTGTGTACTCTTATAACGAGCTTAAATCGGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGTGGATTCGGCATTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATCGCTGAGTTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTGTTATGTTGATGGAAGTAACAGATATTTGGTCTATGATTACATGGAAAACAACAGCCTTGCACATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGCTAGCCAGAAAGGAAATTTTAATTGGAGTTGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCGCATATAGTTCATAGAGATATAAAATCCAGCAATATACTACTCGACCATAATTTTACACCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACCATTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATATCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACCCGAAAATCGGATGTCTATAGCTTCGGAGTGTTGTTGTTGGAGATTGTCAGTGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAGCACCATTTGGTTCAAAAGGTATGGGAACATTACAAGGCGAACGAGCTAGTAAAATTGATAGATCCCATGCTTGACATAGACTTCCGCGAAGAAGAAGCTGTTCGGTTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACACAACGAAACGACCACGAATGTCTCTTGCTTTAAGCATGTTGATGAAAGAGACTGACGTTAATCATAATATTTCACAACCTGGACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCGTCAACCAGCATTTTCTCCAAGGTTTCCACAGGAAATAGCTTATTAAGTCCTACAAAGGTAAGAGATGAATCAGATGATGTACTTACTTGGAAAAGAAAACTGAGGCAAGGCAATGTTCTTAAGCTTAATGTGGTTTCTTTGCGTATGCAAATTTATATATGCATGGCTCCTTGCATGCCATTTAAGAAGGCCACCTATTCTCGGATGATGGGCTTTGCAAATGGCATACAGGGAGCCAGGCAAACAATGCTACATACTTTTGCAATTGAGCCAAAAGAAGAAAGAAAGAGTGAAAAATGA 1347 40.98 MKFRGLLSNCCYSPSPTAMENSRHDRQDNESFRVYSYNELKSATNGFSGANKVGEGGFGIVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGCYVDGSNRYLVYDYMENNSLAHALQGVRENRMRLSWLARKEILIGVARGLAYLHEEVEPHIVHRDIKSSNILLDHNFTPKVADFGLAKLLRENHSHVSTRVAGTIGYLAPEYAVSGHLTRKSDVYSFGVLLLEIVSGRATVDFDLEHGEHHLVQKVWEHYKANELVKLIDPMLDIDFREEEAVRFMKIGLLCVQENTTKRPRMSLALSMLMKETDVNHNISQPGHIIDFMDIKMGKGNSSTSIFSKVSTGNSLLSPTKVRDESDDVLTWKRKLRQGNVLKLNVVSLRMQIYICMAPCMPFKKATYSRMMGFANGIQGARQTMLHTFAIEPKEERKSEK 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26373135 26375384 + CcPI632755_04g010930.1 Cco04g1093 176318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1093 448 Pfam Protein kinase domain 51 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1093 448 SUPERFAMILY Protein kinase-like (PK-like) 28 320 IPR011009 -
Cco04g1093 448 CDD STKc_IRAK 53 322 - -
Cco04g1093 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1093 448 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Cco04g1093 448 Gene3D Phosphorylase Kinase; domain 1 17 124 - -
Cco04g1093 448 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 355 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco04g1093 448 FunFam Serine/threonine-protein kinase receptor 17 124 - -
Cco04g1093 448 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Cco04g1093 448 ProSiteProfiles Protein kinase domain profile. 47 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1093 448 SMART serkin_6 47 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1093 448 Gene3D Transferase(Phosphotransferase) domain 1 125 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1093 Cco-Chr4:26373135 Cco07g1143 Cco-Chr7:25145907 2.20E-99 dispersed
Cco04g1093 Cco-Chr4:26373135 Cco07g1105 Cco-Chr7:24612574 5.30E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86743 PF00069 Pkinase 1.50E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1093 - - - 0.0