Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1095 ATGGCAGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTTTGGGTCGGAAGGTTTCATTGGTTAGAGCTGCACTATACATAATGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGTTGGTGAAGTCATTAAAGAAGGCTAACTTCAATGCCTTCAGCGGTGGAGCCACCGAGCTCGCCGACGGCTTCAGCCCCGGTGCTGGCCTCGCCGCTGAGATCATCGGAACCTTCGTTCTTGTATACACTGTCTTCTCTGCCACCGATCCCAAAAGAAAAGCTAGAGATTCCCATGTTCCTGTTCTAGCGCCGCTCCCAATTGGGTTCGCCGTGTTCGTGGTGAATTTAGCCACGATTCCGGTCACCGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAACCACAAAGCTTGGGATAACCATTGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAGAACTTCCTCAATTTAA 561 49.91 MAGGHINPAVTFGLFLGRKVSLVRAALYIMAQCLGAICGCGLVKSLKKANFNAFSGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWVGPFIGAAMAAIYHEFVLRGGAAKTLKSFRTSSI 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26391714 26393370 - CcPI632755_04g010950.1 Cco04g1095 176320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1095 186 Gene3D Glycerol uptake facilitator protein. 1 186 IPR023271 -
Cco04g1095 186 PRINTS Major intrinsic protein family signature 73 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1095 186 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1095 186 PRINTS Major intrinsic protein family signature 149 169 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1095 186 PRINTS Major intrinsic protein family signature 109 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1095 186 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 182 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cco04g1095 186 ProSitePatterns MIP family signature. 5 13 IPR022357 -
Cco04g1095 186 SUPERFAMILY Aquaporin-like 2 171 IPR023271 -
Cco04g1095 186 Pfam Major intrinsic protein 2 166 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1095 Cco-Chr4:26391714 Cco04g1099 Cco-Chr4:26416435 1.30E-82 dispersed
Cco04g1095 Cco-Chr4:26391714 Cco04g1098 Cco-Chr4:26405713 6.40E-82 proximal
Cco10g2017 Cco-Chr10:33662070 Cco04g1095 Cco-Chr4:26391714 1.30E-76 wgd
Cco04g1095 Cco-Chr4:26391714 Cco08g0888 Cco-Chr8:20756617 3.00E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1095 K09872 - csv:101215842 367.466