Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1099 ATGTCGAAGGATATTGAAGCTGGAGGGCGTGGTGGGTTTAGTGGGAAGGATTACGAAGATCCGCCGCCGGCCCCATTGATCGACGCTCAGGAGTTTGCCCAGTGGTCATTTTATAGAGCCATTATAGCAGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACTGTCATTGGGTATAAAGTTCAGAGTGATGATAAGAATGGAGGCGAGATTTGTGGTGGCGTCGGTATTTTGGGCATTGCTTGGGCCTTTGGTGGCATGATTTTTGTTCTTGTTTACTGCACCGCCGGGATTTCTGGAGGACACATAAATCCGGCTGTGACTTTTGGGCTATTTTTGGCTCGGAAGGTATCATTAGTGAGAGCCGTTTTGTACATGGTGGCTCAGTGTCTAGGCGCCATTTGTGGCTGTGGATTGGTGAAGGCATTCCAAAACGCTCACTACAACAAGTACGGCGGAGGAGCCAACTCGCTTTCCGACGGCTATAGCACCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCTACTGATCCCAAGAGAAATGCCAGAGACTCTCACGTCCCCGTTTTGGCTCCACTCCCAATTGGATTCGCAGTGTTTATGGTTCATTTGGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCCGTGATCTTTAACAAAGACAAGCCCTGGGATGATCAGTGGATCTTTTGGGTTGGGCCGTTCATTGGAGCTGCCATTGCTGCAATTTATCATCAAATCGTGTTGAGGGCAGGGGCAGTTAAAGCTCTGGGATCATTCAGAAGTTCCACTACCGTATGA 864 49.42 MSKDIEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDDKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCGLVKAFQNAHYNKYGGGANSLSDGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTTV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26416435 26423105 + CcPI632755_04g010990.1 Cco04g1099 176324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1099 287 MobiDBLite consensus disorder prediction 1 21 - -
Cco04g1099 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cco04g1099 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cco04g1099 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1099 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Cco04g1099 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cco04g1099 287 FunFam Probable aquaporin PIP1-2 24 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0445 Cco-Chr2:4016780 Cco04g1099 Cco-Chr4:26416435 8.70E-123 dispersed
Cco02g2263 Cco-Chr2:35171958 Cco04g1099 Cco-Chr4:26416435 1.10E-136 dispersed
Cco04g0764 Cco-Chr4:22787659 Cco04g1099 Cco-Chr4:26416435 1.00E-10 dispersed
Cco04g1095 Cco-Chr4:26391714 Cco04g1099 Cco-Chr4:26416435 1.30E-82 dispersed
Cco04g1096 Cco-Chr4:26394289 Cco04g1099 Cco-Chr4:26416435 4.40E-30 dispersed
Cco04g1099 Cco-Chr4:26416435 Cco05g2361 Cco-Chr5:32129236 3.80E-134 dispersed
Cco04g1098 Cco-Chr4:26405713 Cco04g1099 Cco-Chr4:26416435 2.20E-142 tandem
Cco04g1099 Cco-Chr4:26416435 Cco04g1100 Cco-Chr4:26426907 4.60E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1099 K09872 - csv:101216085 525.398