Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1100 ATGTCTAACAATGTCAAAGACTACCAAGACCCACCGCCGGCCCCCTTCATCGACGCCGGCGAGTTCATTCAATGGTCGTTTTACAGAGCCATTATCGCCGAGTTCGTCGCCACCCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGCCTCTCCGCCTCCAATGTCTGCGGCGGCGTCGGACTTTTGGGCATTTCCTGGGCTGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGTGGGCATATTAATCCGGCGGTGACGTTCGGGATGTTGTTAGCTCGAAAAATCTCTCTAATCAGAGCTTTTTTTTACATTGTGGCTCAATGTTTGGGAGCCATTTGTGGGTGTGCATTGGCTAAATCATTACAGAAGACTTATTGCGTTCAATTCCAAGGTGCAGCCAATATAATCGCCGATGGGTACAGCATCGGCACCGGCTTAGCCGCGGAGATCATTGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGAAACGCTAGAGATTCTCACATTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGATTATGGTTCATTTAGCCACCATACCCATCACCGGCACCGGCATCAACCCGGCTCGAAGCTTCGGCGCTGCAGTGATGTATAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCAACTTATCATGTAGTTATAATAAGGGCAGGGACAATTAAAGCTCTTGTTTCCTTCAGAAGTTCCTCTGCTCTATAA 822 49.27 MSNNVKDYQDPPPAPFIDAGEFIQWSFYRAIIAEFVATLLFLYILVLTVIGNASLSASNVCGGVGLLGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLIRAFFYIVAQCLGAICGCALAKSLQKTYCVQFQGAANIIADGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVIMVHLATIPITGTGINPARSFGAAVMYNKAKAWDHHWIFWVGPFIGAAIAATYHVVIIRAGTIKALVSFRSSSAL 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26426907 26428098 + CcPI632755_04g011000.1 Cco04g1100 176325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1100 273 FunFam Probable aquaporin PIP1-2 14 271 - -
Cco04g1100 273 CDD MIP 29 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 Gene3D Glycerol uptake facilitator protein. 14 273 IPR023271 -
Cco04g1100 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 269 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cco04g1100 273 NCBIfam MIP family channel protein 33 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 SUPERFAMILY Aquaporin-like 21 257 IPR023271 -
Cco04g1100 273 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Cco04g1100 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1100 273 Pfam Major intrinsic protein 23 252 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1100 Cco-Chr4:26426907 Cco10g2017 Cco-Chr10:33662070 1.80E-112 dispersed
Cco04g1099 Cco-Chr4:26416435 Cco04g1100 Cco-Chr4:26426907 4.60E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1100 K09872 - csv:101215604 496.123