Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1110 | ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCAGCCGGAACAATATCAACCATGATCCGTTGAATTGGGGAGTGGCGGCAGAGTCGTTGAAGGGAAGCCATTTAGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCTGCGAGAGGCGGCGTTGAGGCCAGCAGAAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCGCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATTCGGGAATATTTGGAAATGGCATTGAATCGAGTCACACTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGTGAAGGAGGCTTTCAAACAAGCTGGTATTTCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTCGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTATCTGCTATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCATCATCCTGGTCAGATTGAGGCGGCTGCAATCATGGAACACATTCTGGATGGAAGTTCTTACATTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGTTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCGGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGTAACTTCCAAGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATAGCTATGGCTTCTTATTGCTCTGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAGGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTGGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAATTTAAAGAGCACAGTGAAAAATACAATAAGCCAAGTGGCCAAAAAGGTCCTTACCACTGATGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGTCACTTATCCTTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGATGAACTAAAAGTTGTTTTGCCCAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCATTCAAAATCAAATTAAGGAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAATTGAGTTAGGAACTGAGTTACTTACAGGAGAAAAGGTAAAATCTCCCGGAGAAGTGTGCGAGAAAGTGTTTATCGCTTTATGTCAAGGAAAGATGATTGATCCAATCTTAGAGTGTTTAAAAGAGTGGAACGGTGCTCCAATCCCTATTTGCTAA | 2145 | 43.26 | MAESGHQNGFEFCIGSRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASRKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDVKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSVTYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEDELKVVLPKEVESARFAYENGNFTIQNQIKECRSYPLYKFVRIELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26545980 | 26549007 | + | CcPI632755_04g011100.1 | Cco04g1110 | 176335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1110 | 714 | FunFam | Phenylalanine ammonia-lyase | 261 | 568 | - | - | |
Cco04g1110 | 714 | Gene3D | - | 14 | 260 | IPR024083 | - | |
Cco04g1110 | 714 | SUPERFAMILY | L-aspartase-like | 23 | 714 | IPR008948 | GO:0003824(InterPro) | |
Cco04g1110 | 714 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 196 | 212 | IPR022313 | GO:0016841(InterPro) | |
Cco04g1110 | 714 | PANTHER | HISTIDINE AMMONIA-LYASE | 20 | 714 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Cco04g1110 | 714 | NCBIfam | phenylalanine ammonia-lyase | 23 | 704 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Cco04g1110 | 714 | Gene3D | Fumarase/aspartase (Central domain) | 261 | 709 | - | - | |
Cco04g1110 | 714 | FunFam | Phenylalanine ammonia-lyase | 15 | 260 | - | - | |
Cco04g1110 | 714 | Gene3D | - | 527 | 648 | IPR023144 | - | |
Cco04g1110 | 714 | CDD | PAL-HAL | 59 | 524 | IPR001106 | - | |
Cco04g1110 | 714 | Pfam | Aromatic amino acid lyase | 61 | 539 | IPR001106 | - | |
Cco04g1110 | 714 | FunFam | Phenylalanine ammonia-lyase | 527 | 648 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1110 | Cco-Chr4:26545980 | Cco04g1112 | Cco-Chr4:26562349 | 0.00E+00 | dispersed | |
Cco04g1110 | Cco-Chr4:26545980 | Cco04g1111 | Cco-Chr4:26555232 | 0.00E+00 | tandem | |
Cco03g1581 | Cco-Chr3:30435586 | Cco04g1110 | Cco-Chr4:26545980 | 2.10E-234 | transposed | |
Cco02g2278 | Cco-Chr2:35365136 | Cco04g1110 | Cco-Chr4:26545980 | 0.00E+00 | wgd | |
Cco04g1110 | Cco-Chr4:26545980 | Cco08g0900 | Cco-Chr8:20905066 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1110 | K10775 | - | csv:101217907 | 1344.72 |