Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1110 ATGGCGGAATCCGGTCACCAAAATGGCTTCGAGTTTTGCATCGGCAGCCGGAACAATATCAACCATGATCCGTTGAATTGGGGAGTGGCGGCAGAGTCGTTGAAGGGAAGCCATTTAGAAGAAGTGAAGCGGATGGTGGAAGAATACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACGCTGACGATATCTCAGGTGGCAGCGATCGCCGCCAAGGATTCCGGCGTGGCGGTGGAGCTGTCGGAGTCTGCGAGAGGCGGCGTTGAGGCCAGCAGAAAGTGGGTGATGGACAGCATGAATCAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCGCACCGCCGGACTAAAGAAGGTGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAATTCGGGAATATTTGGAAATGGCATTGAATCGAGTCACACTTTGCCTCACTCAGCAACGAGAGCAGCCATGTTGGTTAGAATTAACACTCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAACTTCTCAACCACAACATCACCCCATGTTTGCCACTTCGAGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGCCGACCGAACTCTAAAGCTATTGGTCCAAATGGAGAAAGTCTTGATGTGAAGGAGGCTTTCAAACAAGCTGGTATTTCATCTGGGTTCTTTGAGTTGCAACCTAAGGAAGGGTTGGCTCTCGTCAATGGGACTGCTGTTGGTTCGGGGTTAGCATCTATTGTTCTTTTTGAGGCAAACATTTTGGCAGTTTTAGCTGAGATTTTATCTGCTATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGATCATTTGACACACAAGTTAAAGCATCATCCTGGTCAGATTGAGGCGGCTGCAATCATGGAACACATTCTGGATGGAAGTTCTTACATTAAAGAAGCTAAAAAATTGCATGAAATTGATCCTCTTCAGAAGCCAAAACAAGATCGTTACGCTCTTAGAACGTCACCTCAATGGCTTGGTCCATTGATTGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCGGTTAATGATAATCCTTTGATTGACGTTTCAAGGAACAAGGCTTTACATGGAGGTAACTTCCAAGGAACGCCAATCGGTGTCTCGATGGACAACACTCGCTTGGCTATAGCTTCGATTGGTAAGCTCATTTTCGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTACCTTCAAATCTCTCTGCCAGTAGAAACCCAAGTTTAGATTATGGATTCAAAGGTACCGAAATAGCTATGGCTTCTTATTGCTCTGAGCTTCAATATTTAGCCAACCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACATAATCAGGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCCATTGACATTTTGAAACTCATGTCTTCAACATTTTTGGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAATTTAAAGAGCACAGTGAAAAATACAATAAGCCAAGTGGCCAAAAAGGTCCTTACCACTGATGCTAATGGAGCTCTCCACCCATCAAGATTTTGTGAGAAGGATTTACTCAAAATTGTTGATAGAGAATACACCTTTGCTTACATTGATGACCCATGCAGTGTCACTTATCCTTTAATGCAGAAGTTAAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGATGAGAAGAACCCAAATAGTTCAATCTTTCAAAAGATTGGTGTTTTTGAAGATGAACTAAAAGTTGTTTTGCCCAAGGAGGTAGAAAGTGCAAGGTTTGCTTATGAAAATGGGAACTTTACCATTCAAAATCAAATTAAGGAATGTCGGTCATATCCACTCTACAAGTTTGTGAGAATTGAGTTAGGAACTGAGTTACTTACAGGAGAAAAGGTAAAATCTCCCGGAGAAGTGTGCGAGAAAGTGTTTATCGCTTTATGTCAAGGAAAGATGATTGATCCAATCTTAGAGTGTTTAAAAGAGTGGAACGGTGCTCCAATCCCTATTTGCTAA 2145 43.26 MAESGHQNGFEFCIGSRNNINHDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIAAKDSGVAVELSESARGGVEASRKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLDVKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLTTDANGALHPSRFCEKDLLKIVDREYTFAYIDDPCSVTYPLMQKLRQVLVEHALANGEDEKNPNSSIFQKIGVFEDELKVVLPKEVESARFAYENGNFTIQNQIKECRSYPLYKFVRIELGTELLTGEKVKSPGEVCEKVFIALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26545980 26549007 + CcPI632755_04g011100.1 Cco04g1110 176335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1110 714 FunFam Phenylalanine ammonia-lyase 261 568 - -
Cco04g1110 714 Gene3D - 14 260 IPR024083 -
Cco04g1110 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824(InterPro)
Cco04g1110 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Cco04g1110 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1110 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco04g1110 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Cco04g1110 714 FunFam Phenylalanine ammonia-lyase 15 260 - -
Cco04g1110 714 Gene3D - 527 648 IPR023144 -
Cco04g1110 714 CDD PAL-HAL 59 524 IPR001106 -
Cco04g1110 714 Pfam Aromatic amino acid lyase 61 539 IPR001106 -
Cco04g1110 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1110 Cco-Chr4:26545980 Cco04g1112 Cco-Chr4:26562349 0.00E+00 dispersed
Cco04g1110 Cco-Chr4:26545980 Cco04g1111 Cco-Chr4:26555232 0.00E+00 tandem
Cco03g1581 Cco-Chr3:30435586 Cco04g1110 Cco-Chr4:26545980 2.10E-234 transposed
Cco02g2278 Cco-Chr2:35365136 Cco04g1110 Cco-Chr4:26545980 0.00E+00 wgd
Cco04g1110 Cco-Chr4:26545980 Cco08g0900 Cco-Chr8:20905066 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1110 K10775 - csv:101217907 1344.72