Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1111 ATGGCACCCGTTGATCAAACCAATGATAGCTTTTGCACCATTACTACTCATCCTGACCCACTAAATTGGGGTTTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGATAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGGTTTGGTGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCAATTACCAAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAAGCTTTCCAACAGGCTGGAATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGATTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGACATTTGGAAGAAAACCTGAAGAATGTAGTGAAGAACACAGTAAGTCAAGTGGCTAAAAAAGTTCTCACCACCGGTGCTAATGGTGCACTTCACCCATCAAGATTTTGTGAAAAAGATTTATTGAAAGTGGTCGACAGAGAATACACCTTTGCCTACGTCGATGATGCGTGCAGTGCGACTTACCCATTGATGCAAAAACTAAGACAAGTTCTTGTTGAACATGCTTTGGGAAATGGTGAAGATGAAAAGAATGTAAACACTTCAGTTTTTCAAAAGATTGGAGTTTTTGAGGAGGAATTGAAAGCCATCTTGCCGAAAGAAGTAGAAAATGCAAGACTCTCCTATGAAAATGGAACGTCCACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTATACAAGTTTGTGAGGGAGGAGTTAGGAACCGGGTTGTTGACTGGAGAGAGGGTGGTATCTCCAGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGCCAAGGAAAGATGATTGATCCAATTTTAGAGTGTTTGAAGGAGTGGAATGGTGCTCCAATCCCCATTTGCTAG 2133 42.76 MAPVDQTNDSFCTITTHPDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNVVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALGNGEDEKNVNTSVFQKIGVFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGERVVSPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26555232 26557364 + CcPI632755_04g011110.1 Cco04g1111 176336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1111 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Cco04g1111 710 Pfam Aromatic amino acid lyase 57 535 IPR001106 -
Cco04g1111 710 Gene3D - 523 644 IPR023144 -
Cco04g1111 710 Gene3D - 11 256 IPR024083 -
Cco04g1111 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Cco04g1111 710 PANTHER HISTIDINE AMMONIA-LYASE 17 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1111 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco04g1111 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Cco04g1111 710 FunFam Phenylalanine ammonia-lyase 257 559 - -
Cco04g1111 710 CDD PAL-HAL 55 520 IPR001106 -
Cco04g1111 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Cco04g1111 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2278 Cco-Chr2:35365136 Cco04g1111 Cco-Chr4:26555232 0.00E+00 dispersed
Cco04g1111 Cco-Chr4:26555232 Cco04g1113 Cco-Chr4:26567141 0.00E+00 dispersed
Cco04g1110 Cco-Chr4:26545980 Cco04g1111 Cco-Chr4:26555232 0.00E+00 tandem
Cco04g1111 Cco-Chr4:26555232 Cco04g1112 Cco-Chr4:26562349 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1111 K10775 - csv:101218144 1369.37