Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1112 | ATGACATCTTTTCTAAAGATCGAAGACAACTTGTGCCATGGCCATAGTGATCCACTCAATTGGGGGGTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGATAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGGTTTGGCGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCAATTACCAAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAAGCTTTCCAACAGGCTGGAATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGATTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATATAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTGATGCAAAAGTTAAGACAAGTTATTGTCGAGCATGCTTTGAATAATGGAGAGGACGAGAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGGCCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACTATTGAGAACCAAATTAAGGAATGCAGATCTTATCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAGGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTCACTGCATTGTGTCAAGGAAAAATGATTGACCCTATTTTCGAATGCTTGAAGGAATGGGATGGGGCTCCAATTCCCATATGTTAA | 2127 | 42.41 | MTSFLKIEDNLCHGHSDPLNWGVAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNIVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKAILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCQGKMIDPIFECLKEWDGAPIPIC | 708 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26562349 | 26564475 | + | CcPI632755_04g011120.1 | Cco04g1112 | 176337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1112 | 708 | Gene3D | Fumarase/aspartase (Central domain) | 255 | 702 | - | - | |
Cco04g1112 | 708 | Gene3D | - | 9 | 254 | IPR024083 | - | |
Cco04g1112 | 708 | Gene3D | - | 521 | 642 | IPR023144 | - | |
Cco04g1112 | 708 | Pfam | Aromatic amino acid lyase | 55 | 535 | IPR001106 | - | |
Cco04g1112 | 708 | CDD | PAL-HAL | 53 | 518 | IPR001106 | - | |
Cco04g1112 | 708 | FunFam | Phenylalanine ammonia-lyase | 521 | 642 | - | - | |
Cco04g1112 | 708 | PANTHER | HISTIDINE AMMONIA-LYASE | 14 | 708 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Cco04g1112 | 708 | SUPERFAMILY | L-aspartase-like | 17 | 708 | IPR008948 | GO:0003824(InterPro) | |
Cco04g1112 | 708 | FunFam | Phenylalanine ammonia-lyase | 8 | 254 | - | - | |
Cco04g1112 | 708 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 190 | 206 | IPR022313 | GO:0016841(InterPro) | |
Cco04g1112 | 708 | NCBIfam | phenylalanine ammonia-lyase | 17 | 698 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Cco04g1112 | 708 | FunFam | Phenylalanine ammonia-lyase | 255 | 564 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1110 | Cco-Chr4:26545980 | Cco04g1112 | Cco-Chr4:26562349 | 0.00E+00 | dispersed | |
Cco04g1112 | Cco-Chr4:26562349 | Cco07g1268 | Cco-Chr7:26689437 | 0.00E+00 | dispersed | |
Cco04g1111 | Cco-Chr4:26555232 | Cco04g1112 | Cco-Chr4:26562349 | 0.00E+00 | tandem | |
Cco04g1112 | Cco-Chr4:26562349 | Cco04g1113 | Cco-Chr4:26567141 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1112 | K10775 | - | csv:101218382 | 1357.43 |