Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1112 ATGACATCTTTTCTAAAGATCGAAGACAACTTGTGCCATGGCCATAGTGATCCACTCAATTGGGGGGTGGCTGCTGATTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTCGAAGAGTATCGGAGGCCTCTTGTCAAGCTTGGTGGTGAAACTCTTACCATTTCTCAAGTGGCTGCTATTGCTACTCGGGATTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCTAGAGCTGGTGTTAAGGCTAGTAGTGATTGGGTTATGGATAGTATGAATAAAGGGACTGATAGTTATGGTGTAACTACTGGGTTTGGCGCTACATCTCATAGAAGGACCAAACAAGGTGGTGCTCTTCAAAAGGAGTTGATTAGATTTTTGAATGCTGGGATTTTTGGAAGTGGAGCTGAATCTGATCATACTTTGCCTCATTCGGCTACGAGGGCGGCTATGTTGGTGAGGATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCAATTACCAAACTTTTGAACCATAATATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGGCCGAATTCTAAAGCTGTTGGTCCAAATGGAGAAAGTCTTGATGCAAAGGAAGCTTTCCAACAGGCTGGAATTCCATCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGCTGGCTCTTGTCAATGGCACAGCTGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGCTGTTCTGTCTGAGATTTTGTCTGCCATATTTGCTGAAGTTATGCAAGGCAAGCCTGAATTTACTGACCATTTGACCCATAAGCTGAAGCATCATCCTGGCCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACAGCCAAGAAGTTGCACGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGCTACGCCCTTAGAACTTCACCCCAATGGTTAGGTCCATTGATTGAAGTGATTCGATTCTCAACAAAATCGATTGAGCGGGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAACTCATTTTTGCTCAATTTTCAGAGCTTGTCAATGATTTCTACAATAATGGATTACCCTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAGATCGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCGAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAATCAAGATGTCAACTCTCTCGGTTTGATCTCTTCAAGAAAAACAGCTGAGGCTATTGACATTTTGAAGCTCATGTCATCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACCTAGAAGAGAACTTGAAGAACACAGTTAAAAATATAGTGAGCCAAGTGGCGAAGAAAGTCCTCACAACTAGCTCAAATGGCACACTTCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTGGTTGATAGAGAATACACTTTTGCTTACATTGACGATCCATGCAGTGCTACTTATCCATTGATGCAAAAGTTAAGACAAGTTATTGTCGAGCATGCTTTGAATAATGGAGAGGACGAGAAAGACCTAAGTACTTCAATCTTTCAAAAAATTGGAACCTTTGAAGAGGAATTGAAGGCCATTTTGCCTAAAGAAGTCGAAAGTGTCAGATTGGCATATGAAAATGGAGATGCAACTATTGAGAACCAAATTAAGGAATGCAGATCTTATCCATTATACAAGTTTGTGAGGGAAGAGTTGGGCACTAACTTGTTAACCGGGGAGAAGGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTCACTGCATTGTGTCAAGGAAAAATGATTGACCCTATTTTCGAATGCTTGAAGGAATGGGATGGGGCTCCAATTCCCATATGTTAA 2127 42.41 MTSFLKIEDNLCHGHSDPLNWGVAADSLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNIVSQVAKKVLTTSSNGTLHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVIVEHALNNGEDEKDLSTSIFQKIGTFEEELKAILPKEVESVRLAYENGDATIENQIKECRSYPLYKFVREELGTNLLTGEKVISPGEECEKVFTALCQGKMIDPIFECLKEWDGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26562349 26564475 + CcPI632755_04g011120.1 Cco04g1112 176337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1112 708 Gene3D Fumarase/aspartase (Central domain) 255 702 - -
Cco04g1112 708 Gene3D - 9 254 IPR024083 -
Cco04g1112 708 Gene3D - 521 642 IPR023144 -
Cco04g1112 708 Pfam Aromatic amino acid lyase 55 535 IPR001106 -
Cco04g1112 708 CDD PAL-HAL 53 518 IPR001106 -
Cco04g1112 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Cco04g1112 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1112 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Cco04g1112 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Cco04g1112 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
Cco04g1112 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco04g1112 708 FunFam Phenylalanine ammonia-lyase 255 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1110 Cco-Chr4:26545980 Cco04g1112 Cco-Chr4:26562349 0.00E+00 dispersed
Cco04g1112 Cco-Chr4:26562349 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1111 Cco-Chr4:26555232 Cco04g1112 Cco-Chr4:26562349 0.00E+00 tandem
Cco04g1112 Cco-Chr4:26562349 Cco04g1113 Cco-Chr4:26567141 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1112 K10775 - csv:101218382 1357.43