Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1113 ATGGCACCAACTCAATTCCAGCAACAGAATGGTTCAATGGAGAGCTTGTGCACTAGCCAAAACGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTTGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGTGGTGAAACCCTCACTATTTCCCAAGTAGCTGCTATTGCTACTCGGGACTCTGATGTTACAGTTGAACTTTCTGAGTCTGCTAGAGCTGGTGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTACGAACAAAGGGACTGATAGTTATGGTGTTACTACTGGGTTTGGTGCTACATCTCATAGAAGAACCAAACAAGGAGGTGCTCTTCAGAAGGAGTTAATTAGATTTTTGAATGCTGGGATTTTTGGAAATGGAGCTGAGTCTGATCATACTTTGCCCCACTCAGCGACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCTATAACCAAACTTTTGAACCATAACATTACTCCATGCTTGCCTCTTCGTGGAACAATTACCGCTTCTGGAGATCTTGTTCCACTTTCTTATATTGCTGGATTGCTCACTGGACGACCTAACTCCAAGGCGATTGGACCCAACGGAGAACATATTGACGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTCGAATTGCAACCTAAGGAAGGTCTTGCTCTTGTTAATGGTACTGCTGTCGGATCAGGATTGGCTTCTATTGTTCTCTTTGAGGCAAATATTTTGGTTGTTCTGGCGGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTTACTGATCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCAGCTGCAATTATGGAGCACATTTTGGATGGAAGCTCTTACATGAAAGCAGCCAAGAAATTGCATGAAATTGATCCCCTCCAAAAACCCAAACAAGATCGCTATGCTCTAAGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCTACAAAATCTATTGAGCGAGAGATTAACTCCGTCAATGACAACCCTTTGATTGACGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTTCAAGGAACACCAATTGGAGTTTCCATGGACAACACTCGATTGGCCATTGCTTCTATTGGGAAGCTCATGTTTGCCCAATTCTCAGAACTTGTTAATGATTTCTACAACAACGGTTTGCCATCTAATCTTTCTGCAAGTAGAAATCCGAGTTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCAGTGACAAGCCATGTTCAAAGCGCCGAGCAGCACAACCAAGATGTTAACTCTCTAGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCTCTCTGCCAAGCAATTGACTTAAGGCATTTTGAGGAAAGCTTGAAGAGCACTGTGAAAAGCGCTGTTAGCCAAATAGCCAAGAAAGTATTGACCACATCCTCTAATGGCGCACTTCACCCCTCAAGATTTTGTGAGAAAGATCTACTCAAAGTCGTTGATAGAGAGTACACATTTGCTTATATCGATGATCCATGTAGTGCTACTTACCCATTGAGCCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAACGGTGATGATGAAAAGAACCCAAACACTTCAATCTTCCAAAAGATTGTTTCTTTCGAGGAGGAACTAAAGGCAATATTATCCAAAGAAGTTGAAAATGCAAGGTTGGCTTATGAGAGTGGAAATTCTAAAATTGAAAATCAGATCAAGAATTGTAGATCATATCCGTTGTATAGATTTGTAAGAGAAGAGTTGGAAACAAAAATGCTAACGGGAGAAAGAGTGATATCTCCGGGAGAAGAGTGTGAGAAAGTATTCACAGCTTTGTGTCAAGGCAAGATGATAGACTCGATCTTAGAGTGCTTGAAGGAGTGGAATGGTGCTCCAATTCCTATTTGCTAA 2142 42.48 MAPTQFQQQNGSMESLCTSQNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESTNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGEHIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHFEESLKSTVKSAVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGDDEKNPNTSIFQKIVSFEEELKAILSKEVENARLAYESGNSKIENQIKNCRSYPLYRFVREELETKMLTGERVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26567141 26569282 - CcPI632755_04g011130.1 Cco04g1113 176338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1113 713 FunFam Phenylalanine ammonia-lyase 260 561 - -
Cco04g1113 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Cco04g1113 713 CDD PAL-HAL 58 523 IPR001106 -
Cco04g1113 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824(InterPro)
Cco04g1113 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Cco04g1113 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1113 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco04g1113 713 Gene3D - 526 647 IPR023144 -
Cco04g1113 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cco04g1113 713 Pfam Aromatic amino acid lyase 60 538 IPR001106 -
Cco04g1113 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Cco04g1113 713 Gene3D - 14 259 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1111 Cco-Chr4:26555232 Cco04g1113 Cco-Chr4:26567141 0.00E+00 dispersed
Cco04g1113 Cco-Chr4:26567141 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1112 Cco-Chr4:26562349 Cco04g1113 Cco-Chr4:26567141 0.00E+00 tandem
Cco04g1113 Cco-Chr4:26567141 Cco04g1114 Cco-Chr4:26572138 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1113 K10775 - csv:101218617 1335.09