Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1114 ATGGCACCTGCCCAATTGGAACAATGTGCTCACCATAATGGCTCAATGGAGAGCTTTTGCACAAGCCATGTTGATCCACTCAATTGGGGTGTGGCAGCTGATGCTCTCAAGGGAAGTCATTTTGATGAGGTGAAGAGGATGGTGGAAGAGTATAGACGGCCTGTGGTGAAGCTTGGGGGTAAGACTCTTACTATTTCTCAAGTGGCTGCTATTGCCACTCGTGATAATGATGTGGTTGTGGAATTGGCTGAGTCTGCTAGAGCAGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAGTAAAGGGACTGATAGTTATGGTGTTACTACTGGATTTGGTGCTACGTCTCATAGAAGGACCAAACAAGGTGACGCTCTTCAGAAGGAGTTGATTCGGTTTCTAAATGCTGGAATTTTTGGAAATGGGGCTGAGTCGAATCATACTTTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTTCAAGGCTATTCGGGTATTCGATTTGAGATTTTGGAAGCTATTGTTAATCTTCTCAATCAAAACATTACTCCATGTTTGCCACTGCGAGGAACAATTACGGCATCTGGGGATCTTGTCCCTTTGTCGTATATTGCTGGGCTACTTACCGGTCGTCATAATTCCAAGGCCACTGGGCCTAATGGGGAAACTCTTGACGCAAAGACTGCCTTTAAAAAAGCCGGCATTCCTTCTGGCTTCTTCGAGTTGCAACCCAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGATTGGCTTCTATTGTCCTATTTGAGGCAAATATATTAGCTGTTTTGTCAGAAATTCTTTCTGCTATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCACAAGTTGAAACATCATCCTGGTCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCTTACATGAAAACAGCCAAGAAACTACATGAAATTGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCCCTTAGAACTTCACCTCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTCCAAGGAACACCAATTGGAGTTTCCATGGACAACACGCGGTTGGCCATTGCTTCAATTGGGAAGCTCATGTTTGCCCAATTCTCTGAACTTGTCAACGATTTTTACAACAACGGCTTGCCTTCTAACCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGAGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATACCTTGCAAATCCGGTGACAAGTCATGTCCAAAGTGCTGAACAACATAACCAAGATGTTAATTCTCTTGGTTTAATTTCTTCGAGAAAAACAGCTGAAGCCATTGATATCTTGAAACTCATGTCATCAACATTTTTAGTTGCACTCTGCCAAGCAATTGACTTAAGGCACTTGGAGGAAAACTTGAAGAGCACAGTTAAAAGCATAGTGAGCCAAGTAGCCAAGAAGATGTTGACAACATCCTCCAATGGTGCACTACACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTCATTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGCTCTACCTATCCGTTGATGCAAAAATTGAGACAAGTACTGGTTGAACATGCACTCACCAATGGTGAAAATGAAAAGGACATGAACACTTCCATCTTCCAGAAGATTACTGCTTTTGAAGATGAATTAAAAGCAATTTTACCAAAGGAAATTGAAAACGCAAGGTTGGCATATGAGAGTGAAAATTGTAAAATTACAAATCAAATTAAGGATTGCAGATCCTATCCATTATATAGATTTGTGAGAGAAGACTTGGAAACAAAACTTTTAACCGGAGAAAGGGTTATATCTCCGGGAGAAGAATGCGAGAAGGTATTTATAGCTTTGTGCCAAGGAAAGATGATTGACTCTATCTTAGAGTGCTTAAAAGAGTGGAATGGTGCTCCCATTCCTATCCTCTGA 2151 41.79 MAPAQLEQCAHHNGSMESFCTSHVDPLNWGVAADALKGSHFDEVKRMVEEYRRPVVKLGGKTLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGDALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIVNLLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKATGPNGETLDAKTAFKKAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKMLTTSSNGALHPSRFCEKDLLKVIDREYTFAYIDDPCSSTYPLMQKLRQVLVEHALTNGENEKDMNTSIFQKITAFEDELKAILPKEIENARLAYESENCKITNQIKDCRSYPLYRFVREDLETKLLTGERVISPGEECEKVFIALCQGKMIDSILECLKEWNGAPIPIL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26572138 26574288 - CcPI632755_04g011140.1 Cco04g1114 176339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1114 716 Gene3D - 17 262 IPR024083 -
Cco04g1114 716 Gene3D - 529 650 IPR023144 -
Cco04g1114 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824(InterPro)
Cco04g1114 716 CDD PAL-HAL 61 526 IPR001106 -
Cco04g1114 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cco04g1114 716 Pfam Aromatic amino acid lyase 63 542 IPR001106 -
Cco04g1114 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco04g1114 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
Cco04g1114 716 PANTHER HISTIDINE AMMONIA-LYASE 22 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1114 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Cco04g1114 716 FunFam Phenylalanine ammonia-lyase 263 571 - -
Cco04g1114 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1581 Cco-Chr3:30435586 Cco04g1114 Cco-Chr4:26572138 1.60E-237 dispersed
Cco04g1114 Cco-Chr4:26572138 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1113 Cco-Chr4:26567141 Cco04g1114 Cco-Chr4:26572138 0.00E+00 tandem
Cco04g1114 Cco-Chr4:26572138 Cco04g1115 Cco-Chr4:26576554 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1114 K10775 - csv:101222092 1333.93