Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1115 ATGGCCCCAATTGAGACCATCTGCAAGAGCTCCATTCATGACCCACTCAACTGGGGTGTAGCTGCTGAGTCCCTCGAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCCCTTGTCAAGCTTGGAGGTGAAACCCTCACCATTTCGCAAGTAGCTGCCATTGCTACTCGAGATTCTGATGTCGTTGTTGAGCTTTCCGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGCGATTGGGTTATGGAGAGCATGAACAAAGGCACGGATAGTTATGGAGGTACTACTGGTTTTGGTGCTACGTCTCATAGGAGGACAAAACAAGGTGGGGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGACTGAGTCGAGTCATACTTTGCCTCATTCAGCTACAAGAGTGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACGAAACTCTTGAACAATAACATCACCCCGTGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCATTGGTCGACCGAATTCTAAAGCTGTTGGTCCAAATGGTGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGGCATTCCATCGGGGTTCTTCGAATTGCAGCCTAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTTTTTGAGGCAAATATTTTGGCTGTCTTATCTGAGATTTTGTCTGCCATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACCCACAAGTTGAAACATCATCCTGGCCAGATTGAAGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACGGCCAAAAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACACGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTTAACGATAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCTGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCCAACCTTTCTGCAAGTAGAAATTCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAGATCCAGTGACAAGTCATGTTCAAAGTGCAGAACAACACAACCAAGATGTTAACTCTCTTGGTTTGATTTCTTCAAGAAAAACAGCCGAAGCCATTGATATTCTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACGGTTAAAACCATTGTAAGCCAAGTGGCGAAAAAAGTTTTGACCACATCCTCTAGTGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGATAGAGAGTATACTTTTGCATATATAGACGATCCATGTAGTGCCACGTATCCACTAATGCAGAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAATGGTGATGACGAAAAGAATGCAAGCACTTCAATCTTCCAAAAGATTGCTACTTTTGAGGAGGAACTAAAGGTAGTTTTACCAAAAGCAATTGAAAATACAAGGTTGGCGTATGAGAGTGGAAAAGCACCTATTAAGAATCAAATTGAAGAATGCATATCTTATCCATTATACAGATTTGTAAGGAAAGAGTTAGGAACAAATCTGTTAACAGGTGAAAAAGTGATATCTCCGGGGGAAGAATGTGAAAAGATATTCACGACTTTGTGTCAAAGAAAGATGATCGATTCTATCTTAGAATGTTTGAATGAGTGGAATGGAGCTCCAATTTCCATATGTTAG 2118 42.07 MAPIETICKSSIHDPLNWGVAAESLEGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVVVELSESARAGVKASSDWVMESMNKGTDSYGGTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRVAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKHDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNSSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKTIVSQVAKKVLTTSSSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDDEKNASTSIFQKIATFEEELKVVLPKAIENTRLAYESGKAPIKNQIEECISYPLYRFVRKELGTNLLTGEKVISPGEECEKIFTTLCQRKMIDSILECLNEWNGAPISIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26576554 26578671 - CcPI632755_04g011150.1 Cco04g1115 176340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1115 705 PANTHER HISTIDINE AMMONIA-LYASE 10 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1115 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Cco04g1115 705 FunFam Phenylalanine ammonia-lyase 252 560 - -
Cco04g1115 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
Cco04g1115 705 CDD PAL-HAL 50 515 IPR001106 -
Cco04g1115 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Cco04g1115 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Cco04g1115 705 FunFam Phenylalanine ammonia-lyase 6 251 - -
Cco04g1115 705 Gene3D - 6 251 IPR024083 -
Cco04g1115 705 NCBIfam phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cco04g1115 705 Gene3D - 518 639 IPR023144 -
Cco04g1115 705 Pfam Aromatic amino acid lyase 52 531 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1115 Cco-Chr4:26576554 Cco07g1268 Cco-Chr7:26689437 0.00E+00 dispersed
Cco04g1115 Cco-Chr4:26576554 Cco04g1117 Cco-Chr4:26582599 6.30E-122 proximal
Cco04g1114 Cco-Chr4:26572138 Cco04g1115 Cco-Chr4:26576554 0.00E+00 tandem
Cco04g1115 Cco-Chr4:26576554 Cco04g1116 Cco-Chr4:26581476 5.00E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1115 K10775 - csv:101218856 1308.51