Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1115 | ATGGCCCCAATTGAGACCATCTGCAAGAGCTCCATTCATGACCCACTCAACTGGGGTGTAGCTGCTGAGTCCCTCGAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAAGAGTATCGAAGGCCCCTTGTCAAGCTTGGAGGTGAAACCCTCACCATTTCGCAAGTAGCTGCCATTGCTACTCGAGATTCTGATGTCGTTGTTGAGCTTTCCGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGCGATTGGGTTATGGAGAGCATGAACAAAGGCACGGATAGTTATGGAGGTACTACTGGTTTTGGTGCTACGTCTCATAGGAGGACAAAACAAGGTGGGGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGACTGAGTCGAGTCATACTTTGCCTCATTCAGCTACAAGAGTGGCCATGTTGGTGAGAATCAACACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACGAAACTCTTGAACAATAACATCACCCCGTGTTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCATTGGTCGACCGAATTCTAAAGCTGTTGGTCCAAATGGTGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGGCATTCCATCGGGGTTCTTCGAATTGCAGCCTAAGGAAGGGTTGGCTCTTGTTAATGGCACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTTTTTGAGGCAAATATTTTGGCTGTCTTATCTGAGATTTTGTCTGCCATTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTTACAGACCATTTGACCCACAAGTTGAAACATCATCCTGGCCAGATTGAAGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACGGCCAAAAAGTTGCATGAAATGGATCCTCTCCAAAAGCCCAAACACGATCGTTATGCCCTTAGAACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGGTTCTCAACAAAGTCTATTGAACGAGAGATTAATTCAGTTAACGATAATCCTTTGATTGATGTTTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGACAACACTCGTCTGGCTATTGCTTCAATTGGAAAGCTCATGTTTGCTCAATTTTCTGAACTTGTCAATGATTTCTACAACAATGGTTTACCTTCCAACCTTTCTGCAAGTAGAAATTCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAGATCCAGTGACAAGTCATGTTCAAAGTGCAGAACAACACAACCAAGATGTTAACTCTCTTGGTTTGATTTCTTCAAGAAAAACAGCCGAAGCCATTGATATTCTGAAACTCATGTCTTCCACCTTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACGGTTAAAACCATTGTAAGCCAAGTGGCGAAAAAAGTTTTGACCACATCCTCTAGTGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGACTTATTGAAGGTTGTTGATAGAGAGTATACTTTTGCATATATAGACGATCCATGTAGTGCCACGTATCCACTAATGCAGAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGCAAATGGTGATGACGAAAAGAATGCAAGCACTTCAATCTTCCAAAAGATTGCTACTTTTGAGGAGGAACTAAAGGTAGTTTTACCAAAAGCAATTGAAAATACAAGGTTGGCGTATGAGAGTGGAAAAGCACCTATTAAGAATCAAATTGAAGAATGCATATCTTATCCATTATACAGATTTGTAAGGAAAGAGTTAGGAACAAATCTGTTAACAGGTGAAAAAGTGATATCTCCGGGGGAAGAATGTGAAAAGATATTCACGACTTTGTGTCAAAGAAAGATGATCGATTCTATCTTAGAATGTTTGAATGAGTGGAATGGAGCTCCAATTTCCATATGTTAG | 2118 | 42.07 | MAPIETICKSSIHDPLNWGVAAESLEGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVVVELSESARAGVKASSDWVMESMNKGTDSYGGTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRVAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKHDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNSSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKTIVSQVAKKVLTTSSSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALANGDDEKNASTSIFQKIATFEEELKVVLPKAIENTRLAYESGKAPIKNQIEECISYPLYRFVRKELGTNLLTGEKVISPGEECEKIFTTLCQRKMIDSILECLNEWNGAPISIC | 705 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26576554 | 26578671 | - | CcPI632755_04g011150.1 | Cco04g1115 | 176340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1115 | 705 | PANTHER | HISTIDINE AMMONIA-LYASE | 10 | 705 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Cco04g1115 | 705 | FunFam | Phenylalanine ammonia-lyase | 518 | 639 | - | - | |
Cco04g1115 | 705 | FunFam | Phenylalanine ammonia-lyase | 252 | 560 | - | - | |
Cco04g1115 | 705 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 187 | 203 | IPR022313 | GO:0016841(InterPro) | |
Cco04g1115 | 705 | CDD | PAL-HAL | 50 | 515 | IPR001106 | - | |
Cco04g1115 | 705 | Gene3D | Fumarase/aspartase (Central domain) | 252 | 700 | - | - | |
Cco04g1115 | 705 | SUPERFAMILY | L-aspartase-like | 14 | 705 | IPR008948 | GO:0003824(InterPro) | |
Cco04g1115 | 705 | FunFam | Phenylalanine ammonia-lyase | 6 | 251 | - | - | |
Cco04g1115 | 705 | Gene3D | - | 6 | 251 | IPR024083 | - | |
Cco04g1115 | 705 | NCBIfam | phenylalanine ammonia-lyase | 14 | 695 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Cco04g1115 | 705 | Gene3D | - | 518 | 639 | IPR023144 | - | |
Cco04g1115 | 705 | Pfam | Aromatic amino acid lyase | 52 | 531 | IPR001106 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1115 | Cco-Chr4:26576554 | Cco07g1268 | Cco-Chr7:26689437 | 0.00E+00 | dispersed | |
Cco04g1115 | Cco-Chr4:26576554 | Cco04g1117 | Cco-Chr4:26582599 | 6.30E-122 | proximal | |
Cco04g1114 | Cco-Chr4:26572138 | Cco04g1115 | Cco-Chr4:26576554 | 0.00E+00 | tandem | |
Cco04g1115 | Cco-Chr4:26576554 | Cco04g1116 | Cco-Chr4:26581476 | 5.00E-167 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1115 | K10775 | - | csv:101218856 | 1308.51 |