Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1116 ATGAAAACTGCCAAGAAACTACATGATATTGATCCTCTTCAGAAGCCAAAACAAGATCGATATGCTCTTAAAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTTATTCGATTCTCCACGAAGTCCATTGAGAGAGAGATTAATTCAGTCAACGACAACCCTTTGATCGATGTTTCAAGGAACAAGGTTTTGCATGGAGGCAACTTCCAAGGAACTCCGATTGGAATTTCAATGGACAATACTCGTCTTGCTATTACTGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATATTTTTGCAAGTAAAAACCCAAACTTGGATTATGGGTTTAAAGGTGCTGAAATCGCTATGGCTTCATATTGCTCTGAGCTACAATATCTTGCATATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACAGAACCAAGATATTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCAGAAGCCATTGACATTTTAAAACTCATGGCTTCTACATTTTTAATTGCTTTGTGCCAAGCAATTGACTTAAGGCATTTGGAGGAAAACTTGAAGAGCACGATTAAAAGCACAGTAAGCCTAGTAGCACAAAAGGTGTTGATCACATCCTCTAATGGTGCACTCAATCCCTCAAGATTGTTCGAGAAGGATTTATTGAAGGTCGTCGATCAAGACTACACTTTTTCCTATATAGATGACCCATGTAGTGCTACTTACCCATTAATGCAGAAATTGAGACAAGTTTTCGTTGAACACACACTTGCAACTGGTGATGATGGAAATAATGCAAACACTTCAATCTTCCAAAAGATTGCTATTTTCGAAGATGAACTGAAGGCAATTTTACCACAGAATGTTGAAAATACAAGATTAGCATATGAGAGTGGAAATGTACAAATTAAGAACCAAATTGAGAAATGCATATCTTACCCATTATATAGATTTGTGAGGGAAGAGTTGGGAACAAAATTACTAACCGGTGAAAAGGTAATATCTCCCAGAGAAGAGTGTGAAAAAATATTCACCGCTTGA 1047 37.25 MKTAKKLHDIDPLQKPKQDRYALKTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKVLHGGNFQGTPIGISMDNTRLAITVNDFYNNGLPSNIFASKNPNLDYGFKGAEIAMASYCSELQYLAYPVTSHVQSAEQQNQDINSLGLISSRKTAEAIDILKLMASTFLIALCQAIDLRHLEENLKSTIKSTVSLVAQKVLITSSNGALNPSRLFEKDLLKVVDQDYTFSYIDDPCSATYPLMQKLRQVFVEHTLATGDDGNNANTSIFQKIAIFEDELKAILPQNVENTRLAYESGNVQIKNQIEKCISYPLYRFVREELGTKLLTGEKVISPREECEKIFTA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26581476 26582522 - CcPI632755_04g011160.1 Cco04g1116 176341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1116 348 SUPERFAMILY L-aspartase-like 2 348 IPR008948 GO:0003824(InterPro)
Cco04g1116 348 Gene3D Fumarase/aspartase (Central domain) 1 348 - -
Cco04g1116 348 FunFam Phenylalanine ammonia-lyase 186 307 - -
Cco04g1116 348 Pfam Aromatic amino acid lyase 14 193 IPR001106 -
Cco04g1116 348 Gene3D - 186 307 IPR023144 -
Cco04g1116 348 PANTHER HISTIDINE AMMONIA-LYASE 1 348 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1116 Cco-Chr4:26581476 Cco07g1268 Cco-Chr7:26689437 2.90E-168 dispersed
Cco04g1115 Cco-Chr4:26576554 Cco04g1116 Cco-Chr4:26581476 5.00E-167 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1116 K10775 - csv:101219091 597.43