Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1117 ATGGCCCTAGTCAAGACCATTTGCAAGAGCTTCATTCATGACCCACTTAACTGGGGTGTGGCGGCTGAGTCCCTCAAGGGAAGTCATCTTGATGAGGTCAAGCGCATGGTGGAGGAGTATTGGAGGCCTCTTGTCAAGTTTGACGGTGAGACACTCACCATTTCTCAAGTGGCTACTATTGCTATTTTGGACACTAATGTTATTGTCGAGCTTTCTACTAGAGCTAGTGTTAAAGCTAGTAGTGATTGGATTATGGAGAGTATGAATAAGGGAACTGATAGTTATGGTATCACCACTGGATTTGGTGCTACATCCCATAGAAGAACCAAACAAGGTGAGTCTCTTCAAAATGAGCTTATTAGATTTTTAAATGCTGGAATTTTTGGAAGTGGCGTTGAAACGAGTCATAGTTTGCCCCATTTTGCTACAAGAGCGGCCATGTTGGTGAGGACCAATACTCTTCTTCAAGGTTACTCAGGTATTAAATTTGAAATTTTGGAAGCCATTACAAAACTCTTGAATCATAGTGTCACTCCGTACTTGCCTCTTCGTGGAACCATTAATGCCTCTGGTGATCTTGTTCCTCTTTCTTACATTGTTGGATTGCTCACTGGTCGACCGAACTCTAAAGCTGTTAGTCCAAATGGAGAAAATCTCGATGCAAAGGAGGCTTTCAAACAAGCTGGTATTACTTCTGGGTTCTTTGAGTTGCGTCCTAAAGAAGGTTTCGCTCTTGTCAATAGCACTGTTGTTGGTTCTGGATTGACTTCTATTGTTCTCTTTGAGGCAAATATTTTGGTTGTTTTATTCGAGATTTTGTCAGCCATCTTGTTGAAATTATGCAAGGAAAGCCTGAGTTTACTGACTATTTGA 873 41.47 MALVKTICKSFIHDPLNWGVAAESLKGSHLDEVKRMVEEYWRPLVKFDGETLTISQVATIAILDTNVIVELSTRASVKASSDWIMESMNKGTDSYGITTGFGATSHRRTKQGESLQNELIRFLNAGIFGSGVETSHSLPHFATRAAMLVRTNTLLQGYSGIKFEILEAITKLLNHSVTPYLPLRGTINASGDLVPLSYIVGLLTGRPNSKAVSPNGENLDAKEAFKQAGITSGFFELRPKEGFALVNSTVVGSGLTSIVLFEANILVVLFEILSAILLKLCKESLSLLTI 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26582599 26583471 - CcPI632755_04g011170.1 Cco04g1117 176342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1117 290 PANTHER HISTIDINE AMMONIA-LYASE 10 278 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cco04g1117 290 Pfam Aromatic amino acid lyase 52 280 IPR001106 -
Cco04g1117 290 SUPERFAMILY L-aspartase-like 14 278 IPR008948 GO:0003824(InterPro)
Cco04g1117 290 FunFam Phenylalanine ammonia-lyase 6 249 - -
Cco04g1117 290 Gene3D - 6 249 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1117 Cco-Chr4:26582599 Cco07g1268 Cco-Chr7:26689437 7.60E-114 dispersed
Cco04g1115 Cco-Chr4:26576554 Cco04g1117 Cco-Chr4:26582599 6.30E-122 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1117 K10775 - csv:101219091 439.884