Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1144 ATGCTGGCCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCAGCTTGCCGCTCCGTGCCGGTGCTGGTACCCCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTAAATGCTTCCTTAACGAGAAGGCAATTGCTCCAAATCTCAGAGAAGGATGATTCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGATTCGGCCAGTACGCTCTCGGCGGCAAAAATGGCGAGTTCTACATAGTCACAGACGATTCGGACGACGATGCGGTAAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATAGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAATGTCATCATCCACAACATCCATATCCACCATTGTTATCCATCAGGTAATACCATGGTCCGATCAAGTCCGACGCATTACGGGTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGATCGAAGGATATATGGATTGATCATTGTTCATTGTCGCATTGCAAAGATGGGCTGATCGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCACATCACGATGAAGTTATGCTGTTGGGTCACAGCGATCACTACTTGCCGGATTCCGGAATGCAGGTTACAATAGCATTCAACCACTTCGGAGAGAAGCTAGTGCAAAGGATGCCACGATGCCGATTAGGTTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGAAACCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCTTACGACCGCAACGCCAAGGAAGTAACGAAGCGAGTCGAAACTTCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGAGGGCGATATCCTCGTAAACGGCGCTTTCTTCGTCACTTCCGGCCAAGGCCTTGAAGTCAAGTACGAGAAGGCTTACAGCGTCGAACCTAAGTCCGCCGCCCTAATTGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGACAATAATTTGGGAATGTGGACTACTGGCCCTAATGGCGGAGGCTTTGCGCTTGGGTCTGGGATGGATTACACTGACGACATGTCGGAAAGTTATTTTGTTAGGGTTTTTTCTCTTTTGTTGTGCTCTTTTTGCGCATTGGTGCTTGCCTTTGTGCTATGA 1431 52.69 MLATTCIVLLALLLPSSLPLRAGAGTPAAALNLTLPGQHPSPELVAQEVHRKVNASLTRRQLLQISEKDDSSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDHYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSEGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFALGSGMDYTDDMSESYFVRVFSLLLCSFCALVLAFVL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26818121 26821467 + CcPI632755_04g011440.1 Cco04g1144 176369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Cco04g1144 476 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Cco04g1144 476 Pfam Pectate lyase 158 341 IPR002022 -
Cco04g1144 476 PANTHER PECTATE LYASE 18-RELATED 24 420 IPR045032 GO:0030570(InterPro)
Cco04g1144 476 SUPERFAMILY Pectin lyase-like 73 402 IPR011050 -
Cco04g1144 476 Gene3D - 77 419 IPR012334 -
Cco04g1144 476 FunFam Pectate lyase 77 419 - -
Cco04g1144 476 SMART amb_all 152 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1144 Cco-Chr4:26818121 Cco05g2392 Cco-Chr5:32401227 3.10E-181 dispersed
Cco04g1144 Cco-Chr4:26818121 Cco08g0925 Cco-Chr8:21168709 3.20E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1144 K01728 - csv:101203012 923.309