Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1147 ATGAGTGGCGCAAGATTCAGCATCAGGACTGGGCGAAGAAGACTGTCACAGATGACGAATTTCGCCTTCCAAGTTCTATTTGGCCGATGGTTCACCGTCTTCGCTTCTTTACTCATCATGTCCGTTTCCGGCGCCACCTACATGTTCGCACTCTACTCCGCTGACATCAAATCCTCCTTCAATTACGATCAGACCACTCTCAACCTCATCGGCTTCTTTAAGGATCTGGGTTCCAACGTCGGAGTCTTTTCCGGCCTCATCAATGAAATTACTCCGCCTTGGGTCGTCCTCTTCATCGGTGGTGTAATGAATTTCTTGGGCTATTTCATGATTTGGCTTTCTGTCACTCACCGAATCCCCAAACCCAAACTGCCCGCAATGTGTTTGTTTATATGCCTAGGTGCCAATTCTCAGACCTTTGCTAATACAGGGGCTTTGATCCCTTCTGTGAGGAATTTCCCCCGGAATCGAGGTAATGTATTGGGTTTGTTAAAAGGGTTTGTTGGGTTAAGTGGGGCAATTTTGACTCAGATTTACCATGCTTTTTATGGGGATAATTCTAAGGATTTTATCTTGCTTATTGCTTGGTTGCCTACTGCTGTTTCTTTCCTGCTTCTTCGGATTGTTAGAGTAGTGGAAGTGAACCCAATATTTAAATCCAATGATCTAAAAAATTTCTATTCTATGCTCTACATTTCCCTTGGTCTTGCTGGCTTCCTCATGATTTTGATTATTGTTCAAAACGAGCTCATGTTTACTAGAATTCAGTATTTGGGTTGTGCGTTTGTTCTCCTAGCGTTTCTTTTTCTTCCACTTGTCGTTGTTATAAGAGAAGAATTCGCCATTAGGAAGAGGAAATTGCAAGGTGTGGATGTAACTTCTTGGCTTCCAGTTCCAACAGACCCATCTCCAGCTGAATTACCATTGCCTAGACCTTCAAGTGTGCCGACGACTGCCATAGCTTTAGCCAACCCAAGTTCTTGCTTTGAAAACGTGTTCAAACCGCCAGAAAGAGGAGAGGATTACACCATTTTACAAGCAATCTTCAGTGTAGATATGTTGATTCTGTTTGTTGCTACAATTTGTGGGGCTGGTGGGACTTTGACTGCAATGGACAACTTGGGTCAGATAGGCAGCTCCCTTGGCTACTCAACTCATACCATTTCTACTTTCACTTCTCTAGTGAGTATATGGGGCTTTCTCGGTCGAGCATTTTCGGGTTATGCTTCTGAATTCTTGTGGATGAAGTATAACTTCTCTCGCCCTCTGTTCCTCACTCTTGTGCTTCTTCTCTCTTGCGTTGGTCATCTTCTAATTGCCTCTGGAGTCCCAACCTCCCTTTATTTTGCTTCAGTTATCATTGGATTTTGCTTTGGAGCACAATGGCCATTGATTTTCGCCATTGTTTCTGAATTATTTGGCTTGAAATACTATGCAACTTTATATAGCATAAGCGGCATTGCTAGCCCAGTTGGCTCATACATTTTCAATGTGAAAGTAGCTGGCTATTTATATGACCAAGAGGCTAGAAAGCAAATGGCAGCCGTTGGTCGTAGAAGTGTAGCTGGTAGAGACTTAGATTGCAAGGGCGTCCATTGTTACAGATTAGCTTTTCTCATAATATCTGCTGCAACCGTGTTCGGTTGTGTTGTTTCCTTCATTTTGGTCCTTCGAACTTGGAAATTCTATAAGGGTGATATCTATAAGAAGTTTAGAGAGGAAAGAAAGGAAGCAGAATGA 1740 42.93 MSGARFSIRTGRRRLSQMTNFAFQVLFGRWFTVFASLLIMSVSGATYMFALYSADIKSSFNYDQTTLNLIGFFKDLGSNVGVFSGLINEITPPWVVLFIGGVMNFLGYFMIWLSVTHRIPKPKLPAMCLFICLGANSQTFANTGALIPSVRNFPRNRGNVLGLLKGFVGLSGAILTQIYHAFYGDNSKDFILLIAWLPTAVSFLLLRIVRVVEVNPIFKSNDLKNFYSMLYISLGLAGFLMILIIVQNELMFTRIQYLGCAFVLLAFLFLPLVVVIREEFAIRKRKLQGVDVTSWLPVPTDPSPAELPLPRPSSVPTTAIALANPSSCFENVFKPPERGEDYTILQAIFSVDMLILFVATICGAGGTLTAMDNLGQIGSSLGYSTHTISTFTSLVSIWGFLGRAFSGYASEFLWMKYNFSRPLFLTLVLLLSCVGHLLIASGVPTSLYFASVIIGFCFGAQWPLIFAIVSELFGLKYYATLYSISGIASPVGSYIFNVKVAGYLYDQEARKQMAAVGRRSVAGRDLDCKGVHCYRLAFLIISAATVFGCVVSFILVLRTWKFYKGDIYKKFREERKEAE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26833413 26835152 - CcPI632755_04g011470.1 Cco04g1147 176372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1147 579 CDD MFS_Mch1p_like 28 549 - -
Cco04g1147 579 Pfam Major Facilitator Superfamily 357 557 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco04g1147 579 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 29 572 - GO:0016020(PANTHER)
Cco04g1147 579 SUPERFAMILY MFS general substrate transporter 30 566 IPR036259 -
Cco04g1147 579 Pfam Nodulin-like 29 276 IPR010658 -
Cco04g1147 579 Gene3D MFS general substrate transporter like domains 330 562 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1147 Cco-Chr4:26833413 Cco05g2390 Cco-Chr5:32381704 2.70E-187 dispersed
Cco10g1983 Cco-Chr10:33350382 Cco04g1147 Cco-Chr4:26833413 1.30E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1147 - - - 0.0