Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1150 ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACACATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTAATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTTGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATTAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTCATCGGAGGTGGGCTTGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA 753 55.38 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26865090 26866333 - CcPI632755_04g011500.1 Cco04g1150 176375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1150 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cco04g1150 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cco04g1150 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Cco04g1150 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Cco04g1150 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco04g1150 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1150 Cco-Chr4:26865090 Cco05g2361 Cco-Chr5:32129236 3.20E-28 dispersed
Cco01g0436 Cco-Chr1:4350792 Cco04g1150 Cco-Chr4:26865090 1.10E-79 transposed
Cco01g0519 Cco-Chr1:5041315 Cco04g1150 Cco-Chr4:26865090 2.60E-44 transposed
Cco01g1605 Cco-Chr1:28740662 Cco04g1150 Cco-Chr4:26865090 2.40E-80 transposed
Cco08g1384 Cco-Chr8:25750245 Cco04g1150 Cco-Chr4:26865090 1.20E-64 transposed
Cco09g0180 Cco-Chr9:1649469 Cco04g1150 Cco-Chr4:26865090 1.90E-76 transposed
Cco09g2212 Cco-Chr9:36467524 Cco04g1150 Cco-Chr4:26865090 3.70E-96 transposed
Cco10g1977 Cco-Chr10:33302486 Cco04g1150 Cco-Chr4:26865090 5.80E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1150 K09873 - csv:101204225 463.766