Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1150 | ATGCCGATCCGTAACATTGCAATTGGAAGGCCCGAAGAGGCTACACATCCAGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTAATCTTTGTTTTTGCTGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACCGAAGGCGGCGCCACCACTCCCGCCGGTCTCATCTCCGCCTCCATCGCCCACGCCTTTGCCCTTTTTGTTGCCGTCTCCGTTGGCGCTAACATCTCTGGTGGCCATGTCAACCCCGCCGTTACCTTCGGTGCCTTCGTCGGTGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCTCAACTCCTTGGATCCGTTGTCGCTTGCTTGCTCCTTAAATTCGTCACCGGCTTGCCCACCGGAAGCTTCGCTCTGTCAGCTGGAGTTGGAGAAATTAACGCCTTCGTTTTCGAGATCGTAATGACCTTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACTATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCATCCATGAACCCGGCCGTGGCCTTCGGCCCATCAGTAGTGAGCTGGTCATGGAGCAGCCACTGGGTCTACTGGGCCGGGCCTCTCATCGGAGGTGGGCTTGCTGGTCTCATCTACGAGTTCATCTTCATTTCCAACACCCACGAGCAGCTCCCAACCACCGACTACTAA | 753 | 55.38 | MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWSSHWVYWAGPLIGGGLAGLIYEFIFISNTHEQLPTTDY | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26865090 | 26866333 | - | CcPI632755_04g011500.1 | Cco04g1150 | 176375 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1150 | 250 | CDD | MIP | 21 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
Cco04g1150 | 250 | Gene3D | Glycerol uptake facilitator protein. | 4 | 250 | IPR023271 | - | |
Cco04g1150 | 250 | SUPERFAMILY | Aquaporin-like | 13 | 246 | IPR023271 | - | |
Cco04g1150 | 250 | FunFam | Probable aquaporin TIP1-1 | 4 | 250 | - | - | |
Cco04g1150 | 250 | Pfam | Major intrinsic protein | 14 | 233 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PRINTS | Major intrinsic protein family signature | 146 | 164 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PRINTS | Major intrinsic protein family signature | 216 | 236 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PRINTS | Major intrinsic protein family signature | 179 | 201 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco04g1150 | 250 | PANTHER | AQUAPORIN-8 | 5 | 246 | IPR034294 | GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1150 | Cco-Chr4:26865090 | Cco05g2361 | Cco-Chr5:32129236 | 3.20E-28 | dispersed | |
Cco01g0436 | Cco-Chr1:4350792 | Cco04g1150 | Cco-Chr4:26865090 | 1.10E-79 | transposed | |
Cco01g0519 | Cco-Chr1:5041315 | Cco04g1150 | Cco-Chr4:26865090 | 2.60E-44 | transposed | |
Cco01g1605 | Cco-Chr1:28740662 | Cco04g1150 | Cco-Chr4:26865090 | 2.40E-80 | transposed | |
Cco08g1384 | Cco-Chr8:25750245 | Cco04g1150 | Cco-Chr4:26865090 | 1.20E-64 | transposed | |
Cco09g0180 | Cco-Chr9:1649469 | Cco04g1150 | Cco-Chr4:26865090 | 1.90E-76 | transposed | |
Cco09g2212 | Cco-Chr9:36467524 | Cco04g1150 | Cco-Chr4:26865090 | 3.70E-96 | transposed | |
Cco10g1977 | Cco-Chr10:33302486 | Cco04g1150 | Cco-Chr4:26865090 | 5.80E-102 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1150 | K09873 | - | csv:101204225 | 463.766 |