Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1156 ATGGCCAAGCTATTATCATTGTCAACGCAAAGCCTATGGGCATCTCTGCTAATCGTGTTGTCGCATGTAATTTCTCATTCAAACGCAGCAGCCTCATTGAGACGTCTCCCGCCTTATGCAAAAGCGCGCAGGCAATTAGGAGGCGCGCAGTTTATTAAAAAGCATCACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAGCACGCTCACGCTACCTTCTATGAAGGTGGCTCCGGAACCTTCGGTGGTGCATGTGGGTACGACGACGTGGAAAAGGAAGGGTATGGAATGCAGACGGCGGCGCTTAGCATGGCGCTGTTCAACAACGGGCAGAGCTGCGGCGCTTGCTTTGAAATCAAATGCATTGACGATCCACAGCGGTGCAAGCCCGGGCAGCCGTCGCTCATGGTAACCGGCACCAACCACTGCCCGCCGAACTACAACCTTGCTAGTGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGATATAGCCAAGCCTGTTTTTCTCAACATTGCTGAGTTCAAGGCTGGCATTGTTCCTATCACTTACCGCAGGGTTCCATGCAAAAAGCAAGGAGGAATTCGATTCACAATAACTGGGAATCCTTATTTCAACCAAGTGTTAGTGTGGAACGTAGGAGGAGCTGGAGATGTGAAAAGTGTCCAAGTGAAGGGTCACCGTAAGCTGAAATGGACAACCATGTCTCGATCGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGTTGGCGAGTCTCTCACCTTCAGGGTTCGAACCAGTGATGGCAAATTCTCCACTTCATGGCACATTGCTCCCACCAATTGGCAGTTTGGGGTTTACTCAATTAATTTCGCCGTTAAAAACAACTGTCCGTTCCCAATTTGGCCGGGAGCTTTAACCGGTGCCGGCAACCAACTATCAACCACTGGCTTCGAATTACTCCCCGGATCAACAACAACGGTAACGACTTCTCCGCCGTGGTCCGGCAGATTTTGGGCAAGAACACTCTGTTCCACTGACGCAAGTGGAAAGTTCTCTTGCGCAACCGCCGATTGTGGCAGTGGCCAAGTCACATGTAATTGCGCCGGCGAAATTCCGCCAGCAAGCCTAGTGGAATTCACAATTGCGCCAAGCGGCGGCCAAGATTTCTCCGACATCAGCCTTGTCGATGGCTTCAATTTACCTGTTTCAGTGGCCCCGATTGGCGGTTCGGATGGGGCGTGCCAAACGGTACTTTGTACAGGAAATGTAAATGCTGTTTGTCCACTGGGATTAGCCATTACAGATGAAGATGGCGCAGTGATCACTTGTAAAAGTGCTTGTATGGCCTTTAATCAGCCTGAAGATTGCTGCAGTGGCGACCATAATCAGCCGGAAACTTGCCCGCCAACCAATTATTCAATGATTTTCAAGAATCAGTGTCCGCAAGCTTATAGGTACGCTTATGATGATAAGACAAGTACTTTTACTTGCACGGGTGGAGCTGATTATGCCATCACATTTTGTCCTTGA 1518 50.46 MAKLLSLSTQSLWASLLIVLSHVISHSNAAASLRRLPPYAKARRQLGGAQFIKKHHRPPFKPGPWKHAHATFYEGGSGTFGGACGYDDVEKEGYGMQTAALSMALFNNGQSCGACFEIKCIDDPQRCKPGQPSLMVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRRVPCKKQGGIRFTITGNPYFNQVLVWNVGGAGDVKSVQVKGHRKLKWTTMSRSWGQKWVTNAMMVGESLTFRVRTSDGKFSTSWHIAPTNWQFGVYSINFAVKNNCPFPIWPGALTGAGNQLSTTGFELLPGSTTTVTTSPPWSGRFWARTLCSTDASGKFSCATADCGSGQVTCNCAGEIPPASLVEFTIAPSGGQDFSDISLVDGFNLPVSVAPIGGSDGACQTVLCTGNVNAVCPLGLAITDEDGAVITCKSACMAFNQPEDCCSGDHNQPETCPPTNYSMIFKNQCPQAYRYAYDDKTSTFTCTGGADYAITFCP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26961909 26967979 + CcPI632755_04g011560.1 Cco04g1156 176381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1156 505 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 205 280 IPR007117 -
Cco04g1156 505 ProSitePatterns Thaumatin family signature. 345 361 IPR017949 -
Cco04g1156 505 SMART dpbb_1 98 185 IPR007112 -
Cco04g1156 505 Gene3D - 194 286 IPR036749 -
Cco04g1156 505 CDD TLP-PA 286 504 - -
Cco04g1156 505 PRINTS Expansin signature 271 287 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 242 263 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 170 183 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 134 144 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 93 107 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 153 170 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 194 206 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 120 131 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 PANTHER EXPANSIN-A15 30 280 IPR002963 GO:0009664(InterPro)
Cco04g1156 505 Pfam Thaumatin family 290 505 IPR001938 -
Cco04g1156 505 CDD DPBB_EXPA_N 64 190 - -
Cco04g1156 505 ProSiteProfiles Thaumatin family profile. 283 505 IPR001938 -
Cco04g1156 505 SMART tha2 286 505 IPR001938 -
Cco04g1156 505 Gene3D Thaumatin 287 505 IPR037176 -
Cco04g1156 505 Gene3D - 51 191 IPR036908 -
Cco04g1156 505 SUPERFAMILY Osmotin, thaumatin-like protein 285 505 IPR037176 -
Cco04g1156 505 FunFam THAUMATIN-LIKE PROTEIN 1 284 505 - -
Cco04g1156 505 Pfam Expansin C-terminal domain 196 274 IPR007117 -
Cco04g1156 505 SUPERFAMILY PHL pollen allergen 192 281 IPR036749 -
Cco04g1156 505 SUPERFAMILY Barwin-like endoglucanases 64 213 IPR036908 -
Cco04g1156 505 PRINTS Expansin/Lol pI family signature 178 194 IPR007118 GO:0005576(InterPro)
Cco04g1156 505 PRINTS Expansin/Lol pI family signature 271 285 IPR007118 GO:0005576(InterPro)
Cco04g1156 505 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576(InterPro)
Cco04g1156 505 PRINTS Expansin/Lol pI family signature 64 79 IPR007118 GO:0005576(InterPro)
Cco04g1156 505 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Cco04g1156 505 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 195 IPR007112 -
Cco04g1156 505 Pfam Lytic transglycolase 98 185 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1156 Cco-Chr4:26961909 Cco07g0335 Cco-Chr7:3494809 4.00E-86 dispersed
Cco08g0226 Cco-Chr8:3861965 Cco04g1156 Cco-Chr4:26961909 2.10E-104 transposed
Cco08g0327 Cco-Chr8:6408542 Cco04g1156 Cco-Chr4:26961909 5.00E-106 transposed
Cco10g1971 Cco-Chr10:33247536 Cco04g1156 Cco-Chr4:26961909 3.00E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1156 - - - 0.0