Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1163 ATGCGCCTGTTCTTTTGCCTCATATCCGCCTTAGCCTCCGTCGTCGTCGTCGTCGTCACGGGCACGGCGGCTGCCTCCCCCAACCATTTCCCTCTCTACAGAGCCTTCCCCCACTTTCCCACTCCCCACTTCCACTCCCTCACAGCTCGCGACCGCCTCCGGCATTCCCGCGTCTTGCGACGACTCGCCGGTGGCATCGTCAATTTCTCCGTTCAAGGCTCCTCCGATCCTTTCATCGGGCTTTATTTCACCAAAGTGAAGTTGGGAAATCCTGAGAGGGAATTCAATGTGCAGATCGATACTGGGAGTGATATTTTGTGGGTCACTTGCAGTCCTTGCGATGGCTGTCCTCAATCAAGCGGACTTGGAGTTGAACTCAACTTATTTGATGCTACAAAGTCATCCTCTGCCAGGGTTGTTCCCTGCTCAGATCCAATATGTGCTGCAATTCCAACCACCACAGATCAATGCTTATCCCAGGCTGACCATTGCGGTTACACCTTCCATTATCGGGATCGAAGTGGGACGTCGGGCTTTTATGTTACTGATTTGATGCATTTTGACATACTTCTGGGGGAGTCAACGATTGCAAATTCTTCAGCCCCTATTGTGTTTGGGTGTAGCGTATATCAGTATGGGGATTTGACTCGAGCAACCAAAGCACTTGATGGAATTTTTGGGTTTGGTCAAGGGGAGTTCTCAGTTATTTCACAATTGTCTTCTCGAGGAATCACACCTAAAGTATTCTCCCATTGTTTAAAAGGAGGGGAAAATGGAGGGGGTATCTTGGTTCTTGGTGAGATTCTGGAGCCCAGCATTGTTTATAGTCCACTTATTCCATCTCAGCCGCACTATACCTTAAATTTACAGAGTATTGCACTCAGCGGGCAATTTTTTGCAAGCCCCACCGTGTTTCCAATATCAAATGCAGGAGAAACTATCATTGACTCTGGAACAACTTTGGCTTACCTTGTGGAAGAAGTCTACGATTGGATTATCAGTGTGATAACTTCTGCTGTTTCTCAATCAGCCACTATCACAATTTCGAGGGGTAACCAATGTTATCGAGTCTCTACGAGTATAGCAGAAATATTTCCTGTGGTCAGCTTTAATTTTGAGGGTACTGCATCCATGGTGGTGACACCTGAAGAATATCTTCAGTTTGACTCCATAGAACCAGCTTTATGGTGCATAGGTTTTCAGAAAGCTGAGGATGGAGTAAACATTTTAGGAGATCTTGTTTTGAAAGATAAGATCATTATCTACGACTTGGCTCGACAACGGATTGGATGGGCGAATTATGACTGTTCGTCGTCTGTAAATGTTTCTGTAACATCCGGGAAGGATGTGTTCATCAATGAAGGACAGCTGAGTTCCATTTTTGTTAATAACCCTGAGGGTTCTCTTGTCTTCATTATTTGTGCTAGCTGCATTCGCCTGGCCAATCTGTATTTTGAATGCCTGGTTGGGCTGCTTATCGCCAATCTGCCAAGAGCAAATGTTCCTGTGCCTGCATCTTACATCTAG 1527 46.17 MRLFFCLISALASVVVVVVTGTAAASPNHFPLYRAFPHFPTPHFHSLTARDRLRHSRVLRRLAGGIVNFSVQGSSDPFIGLYFTKVKLGNPEREFNVQIDTGSDILWVTCSPCDGCPQSSGLGVELNLFDATKSSSARVVPCSDPICAAIPTTTDQCLSQADHCGYTFHYRDRSGTSGFYVTDLMHFDILLGESTIANSSAPIVFGCSVYQYGDLTRATKALDGIFGFGQGEFSVISQLSSRGITPKVFSHCLKGGENGGGILVLGEILEPSIVYSPLIPSQPHYTLNLQSIALSGQFFASPTVFPISNAGETIIDSGTTLAYLVEEVYDWIISVITSAVSQSATITISRGNQCYRVSTSIAEIFPVVSFNFEGTASMVVTPEEYLQFDSIEPALWCIGFQKAEDGVNILGDLVLKDKIIIYDLARQRIGWANYDCSSSVNVSVTSGKDVFINEGQLSSIFVNNPEGSLVFIICASCIRLANLYFECLVGLLIANLPRANVPVPASYI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27055488 27060404 + CcPI632755_04g011630.1 Cco04g1163 176388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1163 508 Gene3D Acid Proteases 267 444 IPR021109 -
Cco04g1163 508 Gene3D Acid Proteases 66 266 IPR021109 -
Cco04g1163 508 CDD pepsin_A_like_plant 82 436 IPR034161 -
Cco04g1163 508 FunFam Aspartic proteinase-like protein 2 268 443 - -
Cco04g1163 508 Pfam Xylanase inhibitor N-terminal 82 266 IPR032861 -
Cco04g1163 508 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco04g1163 508 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco04g1163 508 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco04g1163 508 PANTHER ASPARTYL PROTEASES 19 436 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cco04g1163 508 SUPERFAMILY Acid proteases 77 440 IPR021109 -
Cco04g1163 508 ProSiteProfiles Peptidase family A1 domain profile. 82 432 IPR033121 -
Cco04g1163 508 Pfam Xylanase inhibitor C-terminal 284 432 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1163 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1163 Cco-Chr4:27055488 Cco11g0973 Cco-Chr11:15543936 8.20E-79 dispersed
Cco10g1947 Cco-Chr10:33026718 Cco04g1163 Cco-Chr4:27055488 2.40E-163 wgd
Cco02g2327 Cco-Chr2:35701570 Cco04g1163 Cco-Chr4:27055488 2.20E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1086 . . Bda01g00372 . . Bpe03g01263 . Bma10g00063 Cmo06g00420 . . Cma07g00884 . Car07g00873 . . Cpe08g01063 Bhi03g01538 . . . Hepe04g0962 . . Cla04g00942 Cam04g0981 Cec04g1102 Cco04g1163 Clacu04g1008 Cmu04g0994 Cre04g1050 . . Cone13ag1230 . Lsi01g01276 Csa06g02633 Chy08g00891 Cme04g02458 Blo07g01372 . . Bda05g01201 . Bpe02g00737 Bma01g01975 . Sed04g1426 . Cmo07g00916 Cma06g00425 . Car06g00365 . Cpe03g00220 Cpe19g00441 Bhi11g02016 Tan08g1807 Cmetu04g0283 Lac10g2940 Hepe05g0316 . . Cla10g01863 Cam10g1920 Cec10g1975 Cco10g1947 Clacu10g1937 Cmu10g2681 Cre10g2069 Lsi03g01959 . . Cme08g01252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007955 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7 6 0 35