Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1172 ATGGCCGCAATCCCTCTTTTCCCATTACAATTCTCCTTCTTCTTTCTCTTCTGTAGTATTAACCCTGAAATCAACCAGTTTTCACTCCAATTTTTCCCTTCTTCAACCTTCACACACATGAAGTTGCCGGTTTTTGTAATTCCTCTCATCGCTTTTTCTTGTTTCATTGCTCTTTTGGGTCCTCACTTCTCCACAGGTTGGACCATTTTCTTTGATAAATATGCTTCAATCCAGACCTCTGTTTCTTCTTCCTCCCAAACAGAGGATTTTCATTCTAATACCTCCGCCGCCGCCGCGAAGGATCATACAGTAGAACACCACCACCAACCTCTGTTCAATCACTCTCTTTTCTCGAATCACTCTGTTTTCTCAAACCACTCTGGTTTTTCTTCTTCTTCTCCTCCATCGCCACCATCGAACGACGAAATGCAGAGTATTCACCTACACTCTAATAGGACGAGAGTCAACGAAGATTTGGGAGAAACCGCCATTAATGAAGTGATCCGAAACGTTTCTTCTGAAAGTAATTATGAATCGGCGGTGACAGTGAAAGCGAGAAGACAAAGGGAATATACAAAATTAGAGAGGATCGAAGCAGGGCTAAGAAGAGCAAGAGCCGCCATTAGAGAAGCCAAGTTCCATAACCAAACTCAAGATCCTGACTTTGTTCCTTCTGGCCCAATGTATTGGAATTCCAAAGCGTTTCACAGGAGTTACCTAGAAATGGAGAAGGAGATGAAGATCTTCGTGTACGAAGAAGGAGAGCCTCCTCTGTTTCACAATGGCCCTTGCAAGAGCATTTACTCAACCGAAGGCAACTTCATCCACGCCATCGAAATGGACTCTGTGTTTCGAACCAAAGATCCCGAAAAGGCCCATGTCTTCTTCCTTCCTCTCAGCGTTGCGATGCTCGTTCGGTTCGTCTATGTTCATGACTCGCACGACTTCACTCCAATACGACACACCGTTGTTGATTACATCAATGTCATTGGAACCAAATATCCGTTCTGGAATCGCACACTTGGTGCTGATCATTTCATGCTCTCCTGTCATGATTGGGGGCCAGAAGCATCGAAGTCAGTTCCCCATTTATACAAAAACTCGATCCGAGTACTTTGCAACGCCAACACTTCCGAAGGCTTCAACCCATCAAAGGATGTATCATTCCCAGAAATCAATCTACAGACAGGTTTCTTGACCGGATTTCTTGGCGGTCCATCTCCCTCGCGCCGCCCAATTCTGGCTTTCTTCGCCGGTGGGCTTCACGGCCCAATAAGGCCCATTCTAATCCAGCAATGGGAGAACCAAGACCAAGACATTCAAGTCCACCAGTACCTCCCCAAAGGGGTCTCTTACATTGACATGATGAGGAAGAGCAAGTTCTGCCTCTGCCCCAGCGGCTACGAAGTCGCCAGTCCAAGAATTGTCGAGGCCATTTACACCGGCTGCATTCCTGTCCTAATTTCCGACCACTACGTCCCACCGTTCAGCGATGTCATCAATTGGAAATCTTTCTCCGTGGAAGTCTCGATCGGCGACATTCCAAACTTGAAGACAATCCTGACCGGGATATCGACGCGGCAGTACTTGAGAATGTATAGGAGAGTGGTGAAAGTTAGGAGACACTTTGAAGTGAACTCTCCGCCGAAGAGATTTGATGTGTATCATATGATACTTCATTCTGTGTGGCTTAGAAGACTCAATCTTAGACTGCGTGATCGTTGA 1725 46.14 MAAIPLFPLQFSFFFLFCSINPEINQFSLQFFPSSTFTHMKLPVFVIPLIAFSCFIALLGPHFSTGWTIFFDKYASIQTSVSSSSQTEDFHSNTSAAAAKDHTVEHHHQPLFNHSLFSNHSVFSNHSGFSSSSPPSPPSNDEMQSIHLHSNRTRVNEDLGETAINEVIRNVSSESNYESAVTVKARRQREYTKLERIEAGLRRARAAIREAKFHNQTQDPDFVPSGPMYWNSKAFHRSYLEMEKEMKIFVYEEGEPPLFHNGPCKSIYSTEGNFIHAIEMDSVFRTKDPEKAHVFFLPLSVAMLVRFVYVHDSHDFTPIRHTVVDYINVIGTKYPFWNRTLGADHFMLSCHDWGPEASKSVPHLYKNSIRVLCNANTSEGFNPSKDVSFPEINLQTGFLTGFLGGPSPSRRPILAFFAGGLHGPIRPILIQQWENQDQDIQVHQYLPKGVSYIDMMRKSKFCLCPSGYEVASPRIVEAIYTGCIPVLISDHYVPPFSDVINWKSFSVEVSIGDIPNLKTILTGISTRQYLRMYRRVVKVRRHFEVNSPPKRFDVYHMILHSVWLRRLNLRLRDR 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27140985 27144094 + CcPI632755_04g011720.1 Cco04g1172 176397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1172 574 Pfam Exostosin family 243 522 IPR040911 -
Cco04g1172 574 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 269 500 - -
Cco04g1172 574 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 147 566 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1172 Cco-Chr4:27140985 Cco08g0212 Cco-Chr8:3518005 2.50E-153 dispersed
Cco04g1172 Cco-Chr4:27140985 Cco08g1515 Cco-Chr8:26856511 9.70E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1172 - - - 0.0