Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1190 ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAACGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTCAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTCTCTGGGAAAGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAAGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTGTACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAAGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCACACACGTTTCTTTCGTCAAAATCAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACATTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAACATATTAAGATGCTGTTCAGATAGATTCAGGTGTGTGTTCAGTAACGTTTCTGGCCTGATTCTTCTCTGTTCTTCCCATACTTGTGTTCCTAATGGTAGAGAACTATTTTGGCACTCCTGGGGAAAAGGCAGGAAAGCTTGCAATCTTGAACAACTAGACTATAGTCTTCTTTCCAGAATGCAAGCTTCTACTTCCATCCTGAAAGATTCATTCATGTATATTAATTTCTTCGCCGAAAGTGCCTCCATTTTTGAGCTTGGGAGGCAAACCCTTCCCACTACTTTGACATCTTTTGGCGACTGGGAATGGATCAAGCGCTAA 2856 43.24 MEMPGRRSDYSLLSQIPDEEVGTGASTSFYDSIAAGGNVYNGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCQYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLNTQDGKSEQFRSCITSQSTVQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSNILRCCSDRFRCVFSNVSGLILLCSSHTCVPNGRELFWHSWGKGRKACNLEQLDYSLLSRMQASTSILKDSFMYINFFAESASIFELGRQTLPTTLTSFGDWEWIKR 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27334546 27342673 + CcPI632755_04g011900.1 Cco04g1190 176415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1190 951 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cco04g1190 951 PANTHER SERINE-THREONINE PROTEIN KINASE 169 833 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco04g1190 951 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Cco04g1190 951 SUPERFAMILY Protein kinase-like (PK-like) 554 830 IPR011009 -
Cco04g1190 951 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Cco04g1190 951 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Cco04g1190 951 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Cco04g1190 951 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1190 951 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Cco04g1190 951 CDD STKc_MAP3K-like 582 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1687 Cco-Chr3:31590112 Cco04g1190 Cco-Chr4:27334546 1.80E-118 dispersed
Cco04g1190 Cco-Chr4:27334546 Cco11g1512 Cco-Chr11:27937166 8.20E-173 dispersed
Cco10g1925 Cco-Chr10:32842805 Cco04g1190 Cco-Chr4:27334546 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86747 PF07714 PK_Tyr_Ser-Thr 5.10E-69 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1190 K14510 - csv:101208800 1569.67