Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1190 | ATGGAAATGCCTGGAAGGAGGTCAGATTACTCGCTTTTAAGTCAAATTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCCTTTTACGACTCAATAGCAGCTGGCGGAAACGTTTACAACGGGAGAACCGATAGAGTTTTTGATTGGGACGGGAGTGGTGATCACAGGTTAAACACGCAAGCGAATCGGATAGGGAACCTGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCGCCGACGCTCTCAAACGCTGCAGCAAATGAGATCAATGCATTGGGATATATCAACGACGATGAATTCAGAGTGAAAACTTTGGCAAGTGGAGGTTCGTCAGGAAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTATCAATTGCAGCAGGCTTTGGCTCTCAGGCTTTCTTCAGAGGCTACTTGTGCCGATGATCCCAACTTTATGGATCCGATGCCAGACGAGGCAGCTTTAAGATCGTTGTCGAGTTCAGCTGAGGCCACCTCGCATCGATTCTGGGTAAATGGATGCATGTCATATTTTGAGAAAGTGCCAGATGGTTTTTATCTAATTCATGGGATGGACCCCTATGTATGGTCATTATGCACCAATCTGCAAGAGGATGGCCGTATACCATCATTTGAATCTCTGAAGACAGTTGATTCCAGTGCTGGTTCATCAATTGAAGTAGTTTTGATAGATCGGCATAGTGATGCTAGCTTAAAGGAACTGCAAAACAGGGTGCATCATATTTCTTCTAGTTGTATAACCACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTATGCAATCACTTGGGGGGTTCGGTTTCTGAGGGAGAAGATGACTTGGTTTCTTCCTGGAGGGAATGCAGTGATGACTTAAAAGAATGTTTGGGATCTGCTGTGATTCCCTTATGCAGCTTATCTGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGTTAGCTGATTCTATAGATTTGCCCTGTCGAATTGCTAGGGGCTGTCAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGCCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTCTCTGGGAAAGATGCTGCGTTCTCTGTCTATCAAAGGCCATTAAATAGGAAAGATGGGGATGGAAAAAACATAGTGCTTACTGGTGACAGGGACAGAAGTTCTCAGTTATTGAATCCAAAATCTGCCCAACTGAATACTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTATTACTTCTCAATCTACTGTACAGTCTACCCCTTTTGTAGACAACGTAGTCCCTTTAAACCATATCTCACAGATTGGTTCCAGAGATTCTGAGCCTCTCTTAGCATTGTCTCATGTAAGGGTGGATCATGCTAACAATTTATCATTTATTGACGGTAGTCAACTGATTAGAAAACCAAATGAGCTTTCCTTTGGCATAGAAGATTTGGTTATTCCATGGAAAGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCACGGCTCAGATGTTGCTGTGAAGATTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACACCCGAACATTGTTCTCTTTATGGGTGCAGTCACAGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGGGGTAGTTTGCACAGGCTTTTGCATAGGCCTGGGGCAAGAGAAGTCTTAGATGAGAGACGACGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAACGTAACCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTAGTTGATAAGAAGTACACAGTAAAGGTTTGTGATTTTGGGCTTTCACGTTTAAAGGCACACACGTTTCTTTCGTCAAAATCAGCTGCTGGGACTCCTGAGTGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCGGATGTTTATAGCTTTGGTGTGATTCTGTGGGAGCTTGCTACATTGCAGCAACCATGGGGCAACTTGAACCCAGCGCAGGTTGTGGCAGCCGTAGGTTTCAAAGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCTTCCTTTTATGAAATAATGGAATCGTTGAAGCCATTGATCAAACCTGCTACGCCTCATCAAATTCGCTCAAACATATTAAGATGCTGTTCAGATAGATTCAGGTGTGTGTTCAGTAACGTTTCTGGCCTGATTCTTCTCTGTTCTTCCCATACTTGTGTTCCTAATGGTAGAGAACTATTTTGGCACTCCTGGGGAAAAGGCAGGAAAGCTTGCAATCTTGAACAACTAGACTATAGTCTTCTTTCCAGAATGCAAGCTTCTACTTCCATCCTGAAAGATTCATTCATGTATATTAATTTCTTCGCCGAAAGTGCCTCCATTTTTGAGCTTGGGAGGCAAACCCTTCCCACTACTTTGACATCTTTTGGCGACTGGGAATGGATCAAGCGCTAA | 2856 | 43.24 | MEMPGRRSDYSLLSQIPDEEVGTGASTSFYDSIAAGGNVYNGRTDRVFDWDGSGDHRLNTQANRIGNLYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYINDDEFRVKTLASGGSSGKSWAQQTEESYQLQQALALRLSSEATCADDPNFMDPMPDEAALRSLSSSAEATSHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSAGSSIEVVLIDRHSDASLKELQNRVHHISSSCITTKEVADHLAKLVCNHLGGSVSEGEDDLVSSWRECSDDLKECLGSAVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIARGCQYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSGKDAAFSVYQRPLNRKDGDGKNIVLTGDRDRSSQLLNPKSAQLNTQDGKSEQFRSCITSQSTVQSTPFVDNVVPLNHISQIGSRDSEPLLALSHVRVDHANNLSFIDGSQLIRKPNELSFGIEDLVIPWKDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLHAERFDEFLREVAIMKCLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVATIIEACFASEPWKRPSFYEIMESLKPLIKPATPHQIRSNILRCCSDRFRCVFSNVSGLILLCSSHTCVPNGRELFWHSWGKGRKACNLEQLDYSLLSRMQASTSILKDSFMYINFFAESASIFELGRQTLPTTLTSFGDWEWIKR | 951 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27334546 | 27342673 | + | CcPI632755_04g011900.1 | Cco04g1190 | 176415 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1190 | 951 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 178 | 384 | - | - | |
Cco04g1190 | 951 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 169 | 833 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco04g1190 | 951 | Gene3D | Phosphorylase Kinase; domain 1 | 569 | 654 | - | - | |
Cco04g1190 | 951 | SUPERFAMILY | Protein kinase-like (PK-like) | 554 | 830 | IPR011009 | - | |
Cco04g1190 | 951 | FunFam | Serine/threonine-protein kinase isoform 1 | 567 | 654 | - | - | |
Cco04g1190 | 951 | FunFam | Serine/threonine-protein kinase CTR1 | 655 | 840 | - | - | |
Cco04g1190 | 951 | ProSiteProfiles | Protein kinase domain profile. | 576 | 834 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | SMART | serkin_6 | 576 | 834 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | Pfam | Protein tyrosine and serine/threonine kinase | 577 | 830 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | Gene3D | Transferase(Phosphotransferase) domain 1 | 655 | 844 | - | - | |
Cco04g1190 | 951 | PRINTS | Tyrosine kinase catalytic domain signature | 650 | 663 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | PRINTS | Tyrosine kinase catalytic domain signature | 801 | 823 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | PRINTS | Tyrosine kinase catalytic domain signature | 757 | 779 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | PRINTS | Tyrosine kinase catalytic domain signature | 691 | 709 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | PRINTS | Tyrosine kinase catalytic domain signature | 738 | 748 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 697 | 709 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1190 | 951 | ProSitePatterns | Protein kinases ATP-binding region signature. | 582 | 603 | IPR017441 | GO:0005524(InterPro) | |
Cco04g1190 | 951 | CDD | STKc_MAP3K-like | 582 | 830 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1687 | Cco-Chr3:31590112 | Cco04g1190 | Cco-Chr4:27334546 | 1.80E-118 | dispersed | |
Cco04g1190 | Cco-Chr4:27334546 | Cco11g1512 | Cco-Chr11:27937166 | 8.20E-173 | dispersed | |
Cco10g1925 | Cco-Chr10:32842805 | Cco04g1190 | Cco-Chr4:27334546 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86747 | PF07714 | PK_Tyr_Ser-Thr | 5.10E-69 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1190 | K14510 | - | csv:101208800 | 1569.67 |