Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1192 ATGTTTTTCTCCAAAACCAAATCTCTTAATTCTACACCAAACCCTCCTCGTTACCGAGGTGTCCGCCGTCGGAGCTCCGGCAAGTGGGTTTCAGAGATTCGGGAGCCCAGGAAGCCCAATAGGATTTGGTTGGGAACTTTCCCTACCCCGGAAATGGCTGCCATCGCTTATGACGTGGCAGCCCTGGCTGTCAAGGGCCCCAACGCTGACCTCAACTTTCCTAATTTGGCATCTTCCTTACCAGTGCCGGCCTCCACCGGCGCACGTGATATTCAGGCTGCAGCCACGTCTGCTGCAACAGCTATCGGAGCAGCTGCAGCTACAATAGGGTTAGATGGGAATCCTGCGAGTGGGAGTACTAGAGAAAAAGAAGATGAGGAAGGAGATGAAGGAGAGGAATTAGTAGAGGGGGGATTTGTAGATGAAGATATGATATTTGATATGCCAAATACTCTTATGAATATGGCTGAAGGAATGCTTCTCACTCCTCCATCCTTCAACTTCAACATCAATGCTCCAAATGATTATGAATATCCTCCAACCTATACTCAAGATAACCTTTGGGAATTCCCTTAA 576 48.26 MFFSKTKSLNSTPNPPRYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALAVKGPNADLNFPNLASSLPVPASTGARDIQAAATSAATAIGAAAATIGLDGNPASGSTREKEDEEGDEGEELVEGGFVDEDMIFDMPNTLMNMAEGMLLTPPSFNFNINAPNDYEYPPTYTQDNLWEFP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27355880 27356455 - CcPI632755_04g011920.1 Cco04g1192 176417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1192 191 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1192 191 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1192 191 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1192 191 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1192 191 MobiDBLite consensus disorder prediction 110 135 - -
Cco04g1192 191 MobiDBLite consensus disorder prediction 1 31 - -
Cco04g1192 191 MobiDBLite consensus disorder prediction 1 15 - -
Cco04g1192 191 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Cco04g1192 191 SMART rav1_2 17 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1192 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 153 IPR051032 -
Cco04g1192 191 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677(InterPro)
Cco04g1192 191 Pfam AP2 domain 16 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1192 191 CDD AP2 16 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1192 Cco-Chr4:27355880 Cco10g1916 Cco-Chr10:32766924 1.80E-42 dispersed
Cco10g1915 Cco-Chr10:32757745 Cco04g1192 Cco-Chr4:27355880 1.60E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59044 PF00847 AP2 1.40E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1192 - - - 0.0