Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1196 ATGGGATCTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATAAAACCTGTTCAAAGTAAGGCAGGATCTCGTCATTCAGATTTTGTATCAGACAAAGACCGAAGACTTTCTGCATTGAAAATTGGATTCAAGGGATCTCTAGAGGATGATATCAATCAGCTTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTCGAGGTAAATGCACAGAGAAAAAGTACACTTAAGAAGCCAATAACTGTTGGCATACCTCGGTCACCAGGTATTGGTACTTCTGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCCTTTCAAAGGCGTCTGAAATGGCTGCTATGAAGAGATCATCAAAATCATCCAGCTCTTCAAGAATCTCAGAAGCTGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCCACTGAGTCAGGCTCTTCTTCAGATAAGGGGGGACGTGTGGTTGAAATTTCCCTGGTTCCAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTGCTGTTAAATCACTGGTTGAAAGTGCTCATTCTTCCCAGTTGCCCGCTGCGAAAACAAAAAAATATGTTGAGGTTGCTACTGTGGAACAAAACGTCAATCCCACTTTGTCAAGGAAAGTTGGATCTCAAACATTAAAGGCAGAGCTGGAGAAGGAAGAAGAGTCCATTACTCCACCATCTATATCTTTTTGCACTATTGGCAAGGTCTTAGAGAAGGAGAAGAAAATTCTTGCCGGAAGCAGGGTAGCAAATAAAGTGGCATCATCTAAGGCAGGACGGAAAGGTAGGTTGCAAACTGCATCTTCATCTAAGTTGGGTAGTGGCAATAAGGTAACCAAGTTATCTAGAAATGCCTCCCGTTCTGTTAAACCAGTTATTAGAAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAGGCACATACAATGCAGTCAATGGTGATACGGATCCTAGTAAAAGGAAGTTGATATGTGAGAGGTGCCACTGTGCAATGAATAGTGCAGCTAAAGACTCAAAGAAGGGTGCTGCATCCCAGTTTAGTGGTCTTTGTCCTGATGTAAACATGACCAATTCAAAATCTGGTGTTAACAAATCAGGCTTCAATGTGGATGGCAAGGCTTCTGATGTTAAAGTAAAAAGAAATACAAGGGTGCGGGATAAGGGTGAATTTTCTCAAAGCTCGAAAAGTAGTCAAGGTGAGTACAGTAGCAGTACAACGAGTATTATAAGTGACGATAGCAATGGGCACGGACCCAGTAATGGCAACAGACCTCATATGTCAAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGCAGTATGGGGTCCTCAGCTTGCGGCATTTTAATCTTTTAAAGAAGCTTGGTTGTGGGGACATTGGAACAGTGTATCTTGCTGAGCTAACCGGCACTAATTGCCTATTTGCCATTAAGGTCATGGATAATGAGTTTCTAGCAAGACGGAAGAAAATGCCTAGAGCGCAAACTGAGAGAGAAATACTGAGAATGCTAGATCATCCATTCCTCCCTACACTTTATGTTCAATTTACTTCAGATAATCTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTGCGGCAGAAGCAGCTAGGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTATTTATCGAGATTTAAAACCTGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAATCCAACACTCTTGAAGTCATCATCCTTCAATGCAGACTTGGTGAAAACATCAGGTCCCTGTACAGATTCTAGTTGTGCTGAGCCATTTTGCATTGAACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTTCTACCTGCTGCTGCCAAAACAAGGAAGTCAAAACTTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCGTTGCTGAACCCACTGATGCACGTTCGAATTCCTTCGTTGGCACTCATGAGTATTTGGCTCCCGAGATAATTAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACGTTTGGTGTTTTTCTCTATGAGCTTCTGTATGGTAAAACCCCTTTCAAGGGTTCCAATAATGAAGAAACATTAGCCAATGTAATAATGCAGGGCCTCAGTTTTCCCGACAGCCCAATTGTTAGTTTCCAAGCGAGGGATCTTATCCGAGGACTGTTGGTAAAAGAACCTGAACACCGATTCGGGACAGAGAAAGGGGCTGCAGAGATCAAACAGCACCCGTTCTTCGAGGGGCTAAACTGGGCATTGATCCGGTGTGCAGTTCCTCCAGAACTTCCAGACTTATGTGATATGGACATTACAACCACTCCGATCCGCTGTCTGTTTCTTCCCTCTTTCTCCAAATTCTTCCGGATTCTACCATACCCTGTCTTTAATCACTCGCCGACAAGGAAATTTTTCCAGACAAAGATGCCCAAGATTAAGACGAACCGTGTCAAGTATCCGGAGGGATGGGAGCTAATTGAACCAACTCTTCGAGAATTGCAAGCTAAGATGAGAGAAGCCGAGAATGACCCACATGATGGTAAGAGAAAATGTGAGACTTTGTGGCCTATATTCAAAATAGCCCATCAGAAAAGCCGCTATATATTTGACCTTTATCATCGAAGGAAGGAAATATCTAAGGAATTATTTGAATTCTGTTTGGATCAAGGCTATGCAGATCGTAACTTAATTGCAAAATGGAAGAAGCCTGGTTATGAACGTTTGTGCTGTCTAAGATGCATGCAACCCCGAGATCACAACTTCGCGACAACATGTGTGTGCCGGGTTCCCAAGCACCTGAGGGAGGAGAAGGTTATCGAGTGTGTGCATTGTGGTTGCAGGGGCTGCGCTAGTGGAGATTGA 3063 43.58 MGSGTCEIVEAREEIKPVQSKAGSRHSDFVSDKDRRLSALKIGFKGSLEDDINQLFESISIKNASKSLGHSQVEVNAQRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCLSKASEMAAMKRSSKSSSSSRISEAGRIKTLYNSVMVEATESGSSSDKGGRVVEISLVPEEKKLNFEKRLEHVQASAVKSLVESAHSSQLPAAKTKKYVEVATVEQNVNPTLSRKVGSQTLKAELEKEEESITPPSISFCTIGKVLEKEKKILAGSRVANKVASSKAGRKGRLQTASSSKLGSGNKVTKLSRNASRSVKPVIRNKGLAKKKVKQDLSSPTCSSGTYNAVNGDTDPSKRKLICERCHCAMNSAAKDSKKGAASQFSGLCPDVNMTNSKSGVNKSGFNVDGKASDVKVKRNTRVRDKGEFSQSSKSSQGEYSSSTTSIISDDSNGHGPSNGNRPHMSKDVRWEAIRHAQLQYGVLSLRHFNLLKKLGCGDIGTVYLAELTGTNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVNPTLLKSSSFNADLVKTSGPCTDSSCAEPFCIEPSCQVPCFSPRFLPAAAKTRKSKLDLTTQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNEETLANVIMQGLSFPDSPIVSFQARDLIRGLLVKEPEHRFGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPDLCDMDITTTPIRCLFLPSFSKFFRILPYPVFNHSPTRKFFQTKMPKIKTNRVKYPEGWELIEPTLRELQAKMREAENDPHDGKRKCETLWPIFKIAHQKSRYIFDLYHRRKEISKELFEFCLDQGYADRNLIAKWKKPGYERLCCLRCMQPRDHNFATTCVCRVPKHLREEKVIECVHCGCRGCASGD 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27412527 27419511 - CcPI632755_04g011960.1 Cco04g1196 176421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1196 1020 MobiDBLite consensus disorder prediction 283 311 - -
Cco04g1196 1020 PRINTS G10 protein signature 946 971 IPR001748 GO:0005634(InterPro)
Cco04g1196 1020 PRINTS G10 protein signature 1008 1017 IPR001748 GO:0005634(InterPro)
Cco04g1196 1020 PRINTS G10 protein signature 972 997 IPR001748 GO:0005634(InterPro)
Cco04g1196 1020 PRINTS G10 protein signature 922 945 IPR001748 GO:0005634(InterPro)
Cco04g1196 1020 PRINTS G10 protein signature 887 907 IPR001748 GO:0005634(InterPro)
Cco04g1196 1020 FunFam serine/threonine-protein kinase D6PK-like 565 632 - -
Cco04g1196 1020 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
Cco04g1196 1020 CDD STKc_phototropin_like 479 835 - -
Cco04g1196 1020 ProSiteProfiles Protein kinase domain profile. 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1196 1020 FunFam Serine/threonine-protein kinase D6PK-like 479 564 - -
Cco04g1196 1020 MobiDBLite consensus disorder prediction 422 452 - -
Cco04g1196 1020 MobiDBLite consensus disorder prediction 404 421 - -
Cco04g1196 1020 Gene3D Transferase(Phosphotransferase) domain 1 561 630 - -
Cco04g1196 1020 Pfam Protein kinase domain 711 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1196 1020 Pfam Protein kinase domain 482 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1196 1020 PANTHER FLIPPASE KINASE 1-RELATED 304 833 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco04g1196 1020 SUPERFAMILY Protein kinase-like (PK-like) 454 864 IPR011009 -
Cco04g1196 1020 Pfam Pre-mRNA-splicing factor BUD31 876 1018 IPR001748 GO:0005634(InterPro)
Cco04g1196 1020 ProSitePatterns G10 protein signature 2. 1008 1017 IPR018230 GO:0005634(InterPro)
Cco04g1196 1020 MobiDBLite consensus disorder prediction 328 345 - -
Cco04g1196 1020 MobiDBLite consensus disorder prediction 274 346 - -
Cco04g1196 1020 SMART serkin_6 481 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1196 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1196 1020 Gene3D Transferase(Phosphotransferase) domain 1 707 832 - -
Cco04g1196 1020 FunFam serine/threonine-protein kinase D6PK-like 709 832 - -
Cco04g1196 1020 ProSitePatterns G10 protein signature 1. 975 997 IPR018230 GO:0005634(InterPro)
Cco04g1196 1020 MobiDBLite consensus disorder prediction 391 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1196 Cco-Chr4:27412527 Cco04g1902 Cco-Chr4:33532347 3.00E-149 dispersed
Cco01g1383 Cco-Chr1:24710389 Cco04g1196 Cco-Chr4:27412527 7.00E-74 transposed
Cco09g0841 Cco-Chr9:7910846 Cco04g1196 Cco-Chr4:27412527 1.80E-58 transposed
Cco02g2354 Cco-Chr2:35959367 Cco04g1196 Cco-Chr4:27412527 2.90E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86748 PF00069 Pkinase 7.60E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1196 - - - 0.0