Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1202 ATGGGAGACTTGCCCGGCGGATCTCCGTCGTCCACGGTGGCGGATGACCACCACAACCTGCTTTTGGACGCCATTGGAGATGAAAAGATAGCAAGAGAGTCCAAAATCTACAGCTATGGAAAGAGCTTCAATGGGTTCGCCGCAAGACTTTTGCCTCACGAAGCCACCAAGCTCTCAAATGAGGAGGGTGTAGTTTCGGTATTTCGTAGCAGAAAGCAAAGAATTGTGACGACAAGATCCTGGAATTTTTTGGGATTAGATCATCATTATTCCAAACGTAACCCTAAAATTGAGTCTAATCTCATTGTCGCGGTTTTGGATACGGGGATTTGGATTGACAGTCCTAGTTTCAACGATGAAGGCTATGGCCCACCACCCTCTAAATGGAAGGGCAAGTGCGTCACTGGGCCCAACTTCACAGCCTGCAACAACAAAGTAATCGGTGCGACTTACTTCGATCTGGAAAACGTAAGCCAATATCCAGAGTCGAGCGTGGCGGACACGGAGGGCCACGGCTCTCACACGGCGTCCACGGTGGCAGGTTCGGCCGTGGAGGGGGCGAGCTTGTACGGCCTGGCCAAAGGGACGGCGCGCGGCGGCGTGCCTTCAGCTCGAATTGCAGTCTACAAAGTGTGTTGGAGCATTTTCTGCAGCGAAATGGACGTTCTTGCTGGCTTCGATGAGGCAATCGCCGATGGCGTCGATTTGATTTCCGTCTCCATAGGGTCCCGGCCGATGGATTTCTTCAGGGACGGCCAAGCAATTGGGGCTTTTCATGCCATGAAGAAGGGAATTTTGACGTCCTGCGCCGCCGGCAACGACGGCCCTGAATTGTCCACCGTCGAGAATGTGGCGCCCTGGATTATGACCGTCGCTGCTACGGCCATTGATAGACGGTTCGTCACCGCTTTCAAACTCGGTAATGGCAACAAATTTACTGGACGTTCCATCAACACCTTCTCGCCAGAGAAAGAAATGTACTCTCTTACAAGCGGAGCCAAAGCGTCCAACAATGGCACACCCTATCAAGGAAATGCAAGTGCTTGTGATCCAGAAGCTATAAGCCAAAGCAAAGTGAAGGGAAAGATTGTATATTGCTTGAAAACTTACACAGACCCCTACATCAAATCCTTAGGAGGCACTGGAGTCATTCAACTCACTCGACAACAAGCTGATTATTCCTCCATTTTGCTTCTTCCTGGGGTTACCATCCCCTCACTCTCTGGCAAATACATTGATCTTTATATCAACTCCACCAAGAATCCTAAAGCTGTCATTTATAAGAGTAAAACTGTCAGAATTGATGCTCCCTTTGTTGCTTCTTTCTCATCTAGAGGGCCTCAGTTTATCAGTAGTAACATTCTCAAGCCTGATCTTTCTGCACCAGGGATAGACATCTTGGCTGCTTATACAAAACTAGCAAGTTTGACAGGGGATATGTCAGACAGTAGATATAGTTTATTCACTGTAATGTCAGGTACATCCATGGCCTGTCCTCATGCCACAGCAGCGGCTGCATATGTTAAGTCATTCCACCCCGACTGGTCTCCAGCTGCGGTCAAGTCTGCTCTCATGACCACTGCAACTCCAATGAAGATCAAATCCAAGGACGCTGTACTTGGCTCTGGAGCAGGACAAATAAATCCAACCAAGGCAGTGCATCCCGGCCTTATTTACAACATTTCGTTCAACTCCTACATCTCTTTCCTCTGCAAAGAAGGCTACAACAGCACAACAATCGGCCTACTTGATGGTAACAAGAAGCATAACTGCTCCAAGATCAAGCCTGCACAAGGAACCGATGGTCTCAACTACCCTACAATGCACAAACAGCTCTCAGATCCTAGTTCAGCCATCAAGGCGGTCTTTTATCGAACAGTGACTCATGTCGGGTATGGTCCATCGTTGTACAGGGCAAATATATCATCTCCAGATGGCCTATCTGTCAAAGTTTTTCCAGACACCCTAAATTTTGTTAAGTTACATGAAACGAAAACATTTAAAGTTGTGGTGAAGGGAAAACCTATGCCAGAAGGAATATGGATTCGATCAGCTTTACTTGAATGGAACGACTCTAAACACATAGTTAGAAGCAATATCCTTATCTACAGGAAATTGATCTAA 2124 47.55 MGDLPGGSPSSTVADDHHNLLLDAIGDEKIARESKIYSYGKSFNGFAARLLPHEATKLSNEEGVVSVFRSRKQRIVTTRSWNFLGLDHHYSKRNPKIESNLIVAVLDTGIWIDSPSFNDEGYGPPPSKWKGKCVTGPNFTACNNKVIGATYFDLENVSQYPESSVADTEGHGSHTASTVAGSAVEGASLYGLAKGTARGGVPSARIAVYKVCWSIFCSEMDVLAGFDEAIADGVDLISVSIGSRPMDFFRDGQAIGAFHAMKKGILTSCAAGNDGPELSTVENVAPWIMTVAATAIDRRFVTAFKLGNGNKFTGRSINTFSPEKEMYSLTSGAKASNNGTPYQGNASACDPEAISQSKVKGKIVYCLKTYTDPYIKSLGGTGVIQLTRQQADYSSILLLPGVTIPSLSGKYIDLYINSTKNPKAVIYKSKTVRIDAPFVASFSSRGPQFISSNILKPDLSAPGIDILAAYTKLASLTGDMSDSRYSLFTVMSGTSMACPHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKSKDAVLGSGAGQINPTKAVHPGLIYNISFNSYISFLCKEGYNSTTIGLLDGNKKHNCSKIKPAQGTDGLNYPTMHKQLSDPSSAIKAVFYRTVTHVGYGPSLYRANISSPDGLSVKVFPDTLNFVKLHETKTFKVVVKGKPMPEGIWIRSALLEWNDSKHIVRSNILIYRKLI 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27448513 27452755 - CcPI632755_04g012020.1 Cco04g1202 176427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1202 707 Gene3D - 297 432 - -
Cco04g1202 707 Pfam Peptidase inhibitor I9 10 72 IPR010259 -
Cco04g1202 707 Pfam Fibronectin type-III domain 603 702 IPR041469 -
Cco04g1202 707 PRINTS Subtilisin serine protease family (S8) signature 167 180 IPR015500 -
Cco04g1202 707 PRINTS Subtilisin serine protease family (S8) signature 98 117 IPR015500 -
Cco04g1202 707 PRINTS Subtilisin serine protease family (S8) signature 492 508 IPR015500 -
Cco04g1202 707 ProSiteProfiles Serine proteases, subtilase domain profile. 80 553 - -
Cco04g1202 707 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 103 113 IPR023827 -
Cco04g1202 707 Pfam Subtilase family 99 542 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco04g1202 707 CDD PA_subtilisin_like 304 426 - -
Cco04g1202 707 CDD Peptidases_S8_3 77 529 IPR034197 -
Cco04g1202 707 ProSitePatterns Serine proteases, subtilase family, serine active site. 493 503 IPR023828 -
Cco04g1202 707 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 699 IPR045051 -
Cco04g1202 707 SUPERFAMILY Subtilisin-like 14 580 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco04g1202 707 Gene3D Peptidase S8/S53 domain 101 566 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco04g1202 707 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 75 IPR037045 -
Cco04g1202 707 Gene3D - 570 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1202 Cco-Chr4:27448513 Cco07g0711 Cco-Chr7:13051037 2.50E-190 dispersed
Cco01g0101 Cco-Chr1:834855 Cco04g1202 Cco-Chr4:27448513 1.50E-160 transposed
Cco05g2449 Cco-Chr5:32942669 Cco04g1202 Cco-Chr4:27448513 2.70E-163 transposed
Cco09g1717 Cco-Chr9:28749488 Cco04g1202 Cco-Chr4:27448513 2.40E-16 transposed
Cco10g1903 Cco-Chr10:32583886 Cco04g1202 Cco-Chr4:27448513 3.80E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1202 - - - 0.0