Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1209 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCCGCTCCCCCTGTTGTCGAATTGTCCCTGCCGGACTCCACCACAGATCTGACCATCCCTTCCCTCGCGGCCGTCGGATCTGAGGCCGCAAACCAACCGAAGCCTACTCCGAACCCGAATCCGAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA 537 55.31 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPAPPVVELSLPDSTTDLTIPSLAAVGSEAANQPKPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27513435 27513971 + CcPI632755_04g012090.1 Cco04g1209 176434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1209 178 MobiDBLite consensus disorder prediction 46 118 - -
Cco04g1209 178 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cco04g1209 178 Gene3D - 95 174 IPR035896 -
Cco04g1209 178 MobiDBLite consensus disorder prediction 48 65 - -
Cco04g1209 178 Gene3D - 1 69 - -
Cco04g1209 178 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 178 IPR050652 -
Cco04g1209 178 MobiDBLite consensus disorder prediction 66 80 - -
Cco04g1209 178 SUPERFAMILY AN1-like Zinc finger 102 173 IPR035896 -
Cco04g1209 178 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cco04g1209 178 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cco04g1209 178 FunFam Zinc finger AN1-type containing 6 95 174 - -
Cco04g1209 178 ProSiteProfiles Zinc finger AN1-type profile. 113 159 IPR000058 GO:0008270(InterPro)
Cco04g1209 178 SMART AN1_Zf_4 119 156 IPR000058 GO:0008270(InterPro)
Cco04g1209 178 Pfam AN1-like Zinc finger 119 155 IPR000058 GO:0008270(InterPro)
Cco04g1209 178 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0358 Cco-Chr1:3545834 Cco04g1209 Cco-Chr4:27513435 1.90E-23 dispersed
Cco02g2377 Cco-Chr2:36158432 Cco04g1209 Cco-Chr4:27513435 5.80E-39 dispersed
Cco04g1209 Cco-Chr4:27513435 Cco09g0413 Cco-Chr9:3710708 1.00E-28 dispersed
Cco04g1209 Cco-Chr4:27513435 Cco03g1373 Cco-Chr3:27477162 6.90E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1209 - - - 0.0