Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1209 | ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGCCATCGTCTCTGCGCTAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACTTCCGTCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCCGCTCCCCCTGTTGTCGAATTGTCCCTGCCGGACTCCACCACAGATCTGACCATCCCTTCCCTCGCGGCCGTCGGATCTGAGGCCGCAAACCAACCGAAGCCTACTCCGAACCCGAATCCGAACCCAAACCGTTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGATAAACTGGAAAGGATTTGA | 537 | 55.31 | MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIEAALSASSSPSPSSSPIDPPPAPPVVELSLPDSTTDLTIPSLAAVGSEAANQPKPTPNPNPNPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27513435 | 27513971 | + | CcPI632755_04g012090.1 | Cco04g1209 | 176434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1209 | 178 | MobiDBLite | consensus disorder prediction | 46 | 118 | - | - | |
Cco04g1209 | 178 | ProSiteProfiles | Zinc finger A20-type profile. | 10 | 44 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Cco04g1209 | 178 | Gene3D | - | 95 | 174 | IPR035896 | - | |
Cco04g1209 | 178 | MobiDBLite | consensus disorder prediction | 48 | 65 | - | - | |
Cco04g1209 | 178 | Gene3D | - | 1 | 69 | - | - | |
Cco04g1209 | 178 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 11 | 178 | IPR050652 | - | |
Cco04g1209 | 178 | MobiDBLite | consensus disorder prediction | 66 | 80 | - | - | |
Cco04g1209 | 178 | SUPERFAMILY | AN1-like Zinc finger | 102 | 173 | IPR035896 | - | |
Cco04g1209 | 178 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 15 | 58 | - | - | |
Cco04g1209 | 178 | SMART | A20_3 | 13 | 37 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Cco04g1209 | 178 | FunFam | Zinc finger AN1-type containing 6 | 95 | 174 | - | - | |
Cco04g1209 | 178 | ProSiteProfiles | Zinc finger AN1-type profile. | 113 | 159 | IPR000058 | GO:0008270(InterPro) | |
Cco04g1209 | 178 | SMART | AN1_Zf_4 | 119 | 156 | IPR000058 | GO:0008270(InterPro) | |
Cco04g1209 | 178 | Pfam | AN1-like Zinc finger | 119 | 155 | IPR000058 | GO:0008270(InterPro) | |
Cco04g1209 | 178 | Pfam | A20-like zinc finger | 14 | 37 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0358 | Cco-Chr1:3545834 | Cco04g1209 | Cco-Chr4:27513435 | 1.90E-23 | dispersed | |
Cco02g2377 | Cco-Chr2:36158432 | Cco04g1209 | Cco-Chr4:27513435 | 5.80E-39 | dispersed | |
Cco04g1209 | Cco-Chr4:27513435 | Cco09g0413 | Cco-Chr9:3710708 | 1.00E-28 | dispersed | |
Cco04g1209 | Cco-Chr4:27513435 | Cco03g1373 | Cco-Chr3:27477162 | 6.90E-33 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1209 | - | - | - | 0.0 |