Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1250 ATGCGTGGCGCCTCTCGAGCTCCGAACCGCTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAAGCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCCTTCGCTCCTCCGGGTCATTATTACCACTTCGGCGGCGGTTCCTCCAATGCTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTTAAACCAAAGCAGAAGGGTGTCATGTATAACAATGTGGTTGAATCGAACGATTACAGTCATGATCAGGGATCTTCTCTTAGTTCTGTGCAGACACCTGTGTCTGGAAAAGGAGGAAGGGTGTACAATAAGTCGAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATACTGGAAAGGTTTCAATCAACAAATTCCAGGAAATGTGGATAGCGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGTAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTTGTGACAGAAGAAGACATCAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACCTTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATCGGATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTCGAGGAAAAGTTTGAGGAGATGAATGTGGTTCCGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCAATCATCGGGGAGAGTAGTAGAAACGAAGTTGAACCTCAAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCCAACGAGTTTTCTGGTGGAATGATGAAGATTATTCCTTCAGATGTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACCGATTCTACAGCAGATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCTCAAAGGCCAAGACCAGGAAGCCCACATTCAGAGACAGCCGAAGCACCATCTGATAATACAATTGCGAGCGCTAGTCGGGCGGGGAGTGCAGAGGAAATAGAAACAAACTTTTGTAAGGTTGCAGATGGGAAGAAGCATGTAAGATAG 1488 43.41 MRGASRAPNRSEPLPQSQTAQILPPLKRHLAFDSAKPPFAPPGHYYHFGGGSSNAIDQQPDSIVVKPLKPKQKGVMYNNVVESNDYSHDQGSSLSSVQTPVSGKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRVMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVPPPSSFLHASSSGSNEHLATEAIIGESSRNEVEPQAHLSQHSSSCDVNGSNEFSGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDSTADIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDNTIASASRAGSAEEIETNFCKVADGKKHVR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27876788 27883794 - CcPI632755_04g012500.1 Cco04g1250 176475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1250 495 SUPERFAMILY Winged helix DNA-binding domain 142 205 IPR036390 -
Cco04g1250 495 Gene3D - 136 210 IPR036388 -
Cco04g1250 495 PANTHER TRANSCRIPTION FACTOR E2F 59 422 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco04g1250 495 MobiDBLite consensus disorder prediction 1 38 - -
Cco04g1250 495 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco04g1250 495 MobiDBLite consensus disorder prediction 459 477 - -
Cco04g1250 495 Coils Coil 234 254 - -
Cco04g1250 495 Gene3D - 214 324 - -
Cco04g1250 495 MobiDBLite consensus disorder prediction 83 137 - -
Cco04g1250 495 MobiDBLite consensus disorder prediction 367 385 - -
Cco04g1250 495 MobiDBLite consensus disorder prediction 446 481 - -
Cco04g1250 495 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983(InterPro)
Cco04g1250 495 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Cco04g1250 495 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco04g1250 495 MobiDBLite consensus disorder prediction 363 385 - -
Cco04g1250 495 CDD E2F_DD 223 324 IPR032198 GO:0046983(InterPro)
Cco04g1250 495 FunFam E2F transcription factor 1 136 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1250 Cco-Chr4:27876788 Cco06g1871 Cco-Chr6:28935436 1.00E-09 dispersed
Cco08g1629 Cco-Chr8:27819065 Cco04g1250 Cco-Chr4:27876788 1.20E-60 transposed
Cco02g2395 Cco-Chr2:36291562 Cco04g1250 Cco-Chr4:27876788 8.30E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59049 PF16421 E2F_CC-MB 5.20E-33 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1250 K06620 - csv:101212480 744.962