Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1257 ATGGGGGTTCCACAGGCCATGGAAATTCTCACCGAGAGAGCCGCACTTGTGCGAGAGTCGCTTCAAAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCACCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAATGTAACGATGCTATTTTGACCCACACAAGCAACTTACTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTGACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCGGCATCTGCACATCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCACCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTCGAGAGGCTTAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCGAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGACGGTGCAGACTCTCTCCAGGATCAATGCTTCGCGGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGCGTTGAAATGCGGGATTCTGCATTGAACTTAACCACCCGCCTTGCCGAGACAGCTCAAGAGACATTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCCAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAGCAATACAGGGATCCTGCACTAACTCAATTATTTCTGATGAACAATATTCATTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTTCAGCAGCATGCTAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAAGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTCAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATATATCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAGCAAAAACGCTAG 1917 43.61 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSTLETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKCNDAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGSKNNSDHHNKSLEAATFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACVEMRDSALNLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27928435 27935652 - CcPI632755_04g012570.1 Cco04g1257 176482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1257 638 Pfam Exo70 exocyst complex subunit C-terminal 273 626 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cco04g1257 638 Gene3D Exocyst complex component Exo70 75 638 - -
Cco04g1257 638 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Cco04g1257 638 SUPERFAMILY Cullin repeat-like 76 629 IPR016159 -
Cco04g1257 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 631 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1050 Cco-Chr4:26051444 Cco04g1257 Cco-Chr4:27928435 9.90E-49 dispersed
Cco04g1257 Cco-Chr4:27928435 Cco05g2453 Cco-Chr5:32970871 2.60E-276 dispersed
Cco04g1257 Cco-Chr4:27928435 Cco03g0205 Cco-Chr3:2123041 2.60E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1257 K07195 - csv:105436019 1199.88