Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1257 ATGGGGGTTCCACAGGCCATGGAAATTCTCACCGAGAGAGCCGCACTTGTGCGAGAGTCGCTTCAAAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCACCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAATGTAACGATGCTATTTTGACCCACACAAGCAACTTACTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTGACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCGGCATCTGCACATCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCACCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTCGAGAGGCTTAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCGAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGACGGTGCAGACTCTCTCCAGGATCAATGCTTCGCGGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGCGTTGAAATGCGGGATTCTGCATTGAACTTAACCACCCGCCTTGCCGAGACAGCTCAAGAGACATTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCCAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAGCAATACAGGGATCCTGCACTAACTCAATTATTTCTGATGAACAATATTCATTATATAGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTTCAGCAGCATGCTAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAAGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTCAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATATATCAGATATTCACCCGAGGATCTCGAGCGTATGCTAAATGAATTTTTTGAGGGCAAGACATTCAGTGAGCAAAAACGCTAG 1917 43.61 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSTLETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKCNDAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGSKNNSDHHNKSLEAATFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACVEMRDSALNLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27928435 27935652 - CcPI632755_04g012570.1 Cco04g1257 176482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1257 638 Pfam Exo70 exocyst complex subunit C-terminal 273 626 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cco04g1257 638 Gene3D Exocyst complex component Exo70 75 638 - -
Cco04g1257 638 Pfam Exocyst complex component Exo70 N-terminal 69 151 - -
Cco04g1257 638 SUPERFAMILY Cullin repeat-like 76 629 IPR016159 -
Cco04g1257 638 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 631 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1257 K07195 - - csv:105436019 1199.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1050 Cco-Chr4:26051444 Cco04g1257 Cco-Chr4:27928435 9.90E-49 dispersed
Cco04g1257 Cco-Chr4:27928435 Cco05g2453 Cco-Chr5:32970871 2.60E-276 dispersed
Cco04g1257 Cco-Chr4:27928435 Cco03g0205 Cco-Chr3:2123041 2.60E-82 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2453 . 12 653 EXO70 exocyst subunit family AT5G03540 75.7 4.0e-283 970.7
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G03540 71.0 7.5e-266 913.3
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 8.3e-299 1022.7
Cco05g2453 . 14 653 EXO70 exocyst subunit family AT5G52340 74.2 5.6e-271 930.2
Cco04g1257 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cco05g2453 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.0e-165 578.9
Cco03g0049 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cco03g0049 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cco07g1615 . 63 676 EXO70 exocyst subunit family AT5G13150 53.3 1.3e-174 610.1
Cco01g0910 . 109 720 EXO70 exocyst subunit family AT5G13990 54.0 1.5e-187 653.3
Cco07g1527 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cco07g1527 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cco07g1527 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Cco03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 62.1 3.2e-227 785.0
Cco03g0373 . 18 630 EXO70 exocyst subunit family AT5G50380 61.1 4.9e-212 734.6
Cco08g1418 . 13 682 EXO70 exocyst subunit family AT4G31540 73.6 6.7e-294 1006.5
Cco10g2071 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74