Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1261 | ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCGACAGCAGCACCGCCATGACTCCGTCGAGATTCCCGACAACGCGCCGTCGTCAACGACTATCAATCTCAACAGTTTCTTCGACGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAGCGCCTGTATCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTTCACAATTCGAAGGCGATTAAGGATCTTCGATCGCGAATGGAATCGGATGTGAATCTGGCTCTGAAGAAGGCTAGGTTTATCAAGCTCCGGTTGGAGGAACTGGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCCGCCGACCGGTCAAGAACTTCCGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAATAGATTGAGAGAGGAGATTTCGTCGACGTATAAGGAGACGATTGAACGAAGGTATTTCACAATTACAGGGGAAAATCCTGATGAGAAGACGGTTGATTTGTTGATCTCTACAGGCGAAAGCGAAACATTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCATGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTTCAATCTCAGGGGCAGCAGTTGGACGATATCGAGAGCCAAGTAACTCGAGCCAACTCCGCCGTCAAGCGCGGCACCACGGAGCTACAAACTGCAAGATACTACCAGAAAAACACTCGCAAATGGATCTGCATAGGCGTCATCGTTCTCGCACTCGTTCTTTTCATCATTATCATCTCCGTCGTCCTTTCCAAGAAGTAG | 903 | 48.84 | MNDLFSTDSFRRQQHRHDSVEIPDNAPSSTTINLNSFFDDVESVKAELTELERLYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVNLALKKARFIKLRLEELDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFMDMAVLVQSQGQQLDDIESQVTRANSAVKRGTTELQTARYYQKNTRKWICIGVIVLALVLFIIIISVVLSKK | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27965463 | 27967031 | + | CcPI632755_04g012610.1 | Cco04g1261 | 176486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1261 | 300 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cco04g1261 | 300 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
Cco04g1261 | 300 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
Cco04g1261 | 300 | FunFam | Syntaxin 132 | 197 | 297 | - | - | |
Cco04g1261 | 300 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 31 | 161 | - | - | |
Cco04g1261 | 300 | CDD | SynN | 34 | 191 | IPR006011 | GO:0016020(InterPro) | |
Cco04g1261 | 300 | Gene3D | - | 199 | 298 | - | - | |
Cco04g1261 | 300 | Pfam | SNARE domain | 241 | 292 | IPR000727 | - | |
Cco04g1261 | 300 | SUPERFAMILY | t-snare proteins | 33 | 259 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cco04g1261 | 300 | Coils | Coil | 34 | 68 | - | - | |
Cco04g1261 | 300 | SMART | SynN_4 | 29 | 155 | IPR006011 | GO:0016020(InterPro) | |
Cco04g1261 | 300 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cco04g1261 | 300 | Gene3D | - | 32 | 164 | - | - | |
Cco04g1261 | 300 | CDD | SNARE_syntaxin1-like | 203 | 265 | - | - | |
Cco04g1261 | 300 | Pfam | Syntaxin | 36 | 239 | IPR006011 | GO:0016020(InterPro) | |
Cco04g1261 | 300 | PANTHER | SYNTAXIN | 36 | 286 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0560 | Cco-Chr3:5724362 | Cco04g1261 | Cco-Chr4:27965463 | 2.00E-85 | dispersed | |
Cco04g1261 | Cco-Chr4:27965463 | Cco04g1722 | Cco-Chr4:32322285 | 2.90E-39 | dispersed | |
Cco04g0763 | Cco-Chr4:22778141 | Cco04g1261 | Cco-Chr4:27965463 | 5.70E-59 | transposed | |
Cco10g1337 | Cco-Chr10:26334438 | Cco04g1261 | Cco-Chr4:27965463 | 1.50E-70 | transposed | |
Cco10g1812 | Cco-Chr10:31699964 | Cco04g1261 | Cco-Chr4:27965463 | 2.00E-112 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1261 | K08486 | - | csv:101213199 | 496.123 |