Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1261 ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCGACAGCAGCACCGCCATGACTCCGTCGAGATTCCCGACAACGCGCCGTCGTCAACGACTATCAATCTCAACAGTTTCTTCGACGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAGCGCCTGTATCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTTCACAATTCGAAGGCGATTAAGGATCTTCGATCGCGAATGGAATCGGATGTGAATCTGGCTCTGAAGAAGGCTAGGTTTATCAAGCTCCGGTTGGAGGAACTGGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCCGCCGACCGGTCAAGAACTTCCGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAATAGATTGAGAGAGGAGATTTCGTCGACGTATAAGGAGACGATTGAACGAAGGTATTTCACAATTACAGGGGAAAATCCTGATGAGAAGACGGTTGATTTGTTGATCTCTACAGGCGAAAGCGAAACATTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCATGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTTCAATCTCAGGGGCAGCAGTTGGACGATATCGAGAGCCAAGTAACTCGAGCCAACTCCGCCGTCAAGCGCGGCACCACGGAGCTACAAACTGCAAGATACTACCAGAAAAACACTCGCAAATGGATCTGCATAGGCGTCATCGTTCTCGCACTCGTTCTTTTCATCATTATCATCTCCGTCGTCCTTTCCAAGAAGTAG 903 48.84 MNDLFSTDSFRRQQHRHDSVEIPDNAPSSTTINLNSFFDDVESVKAELTELERLYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVNLALKKARFIKLRLEELDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFMDMAVLVQSQGQQLDDIESQVTRANSAVKRGTTELQTARYYQKNTRKWICIGVIVLALVLFIIIISVVLSKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27965463 27967031 + CcPI632755_04g012610.1 Cco04g1261 176486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1261 300 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cco04g1261 300 SMART tSNARE_6 199 266 IPR000727 -
Cco04g1261 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Cco04g1261 300 FunFam Syntaxin 132 197 297 - -
Cco04g1261 300 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Cco04g1261 300 CDD SynN 34 191 IPR006011 GO:0016020(InterPro)
Cco04g1261 300 Gene3D - 199 298 - -
Cco04g1261 300 Pfam SNARE domain 241 292 IPR000727 -
Cco04g1261 300 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cco04g1261 300 Coils Coil 34 68 - -
Cco04g1261 300 SMART SynN_4 29 155 IPR006011 GO:0016020(InterPro)
Cco04g1261 300 MobiDBLite consensus disorder prediction 1 27 - -
Cco04g1261 300 Gene3D - 32 164 - -
Cco04g1261 300 CDD SNARE_syntaxin1-like 203 265 - -
Cco04g1261 300 Pfam Syntaxin 36 239 IPR006011 GO:0016020(InterPro)
Cco04g1261 300 PANTHER SYNTAXIN 36 286 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0560 Cco-Chr3:5724362 Cco04g1261 Cco-Chr4:27965463 2.00E-85 dispersed
Cco04g1261 Cco-Chr4:27965463 Cco04g1722 Cco-Chr4:32322285 2.90E-39 dispersed
Cco04g0763 Cco-Chr4:22778141 Cco04g1261 Cco-Chr4:27965463 5.70E-59 transposed
Cco10g1337 Cco-Chr10:26334438 Cco04g1261 Cco-Chr4:27965463 1.50E-70 transposed
Cco10g1812 Cco-Chr10:31699964 Cco04g1261 Cco-Chr4:27965463 2.00E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1261 K08486 - csv:101213199 496.123