Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1262 ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTCCACCACAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTTGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 516 53.49 MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSPPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27970270 27970785 + CcPI632755_04g012620.1 Cco04g1262 176487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1262 171 CDD RING-H2_EL5-like 105 148 - -
Cco04g1262 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 165 IPR045899 -
Cco04g1262 171 FunFam E3 ubiquitin-protein ligase ATL6 66 153 - -
Cco04g1262 171 SMART ring_2 106 147 IPR001841 -
Cco04g1262 171 SUPERFAMILY RING/U-box 82 153 - -
Cco04g1262 171 Pfam Ring finger domain 105 148 IPR001841 -
Cco04g1262 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
Cco04g1262 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1262 Cco-Chr4:27970270 Cco08g1224 Cco-Chr8:23960290 6.60E-25 dispersed
Cco05g0157 Cco-Chr5:1226118 Cco04g1262 Cco-Chr4:27970270 2.30E-28 transposed
Cco10g1805 Cco-Chr10:31646214 Cco04g1262 Cco-Chr4:27970270 3.90E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1262 - - - 0.0