Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1268 ATGGCAGCTTCAGGGTTGCTCGCGTTTCATCTCCCTCGCCTCGCCCGCCACTTTCCAATCCCTCATTCATTTAATCCTTCCCTTTCTTTTCATAACCTTCTAGCTCGCACGAAACTACCGCCTCGCCGCCCAGTCATACTCGGCCGCAATTGCATACTTAGGAGGTCGTTCGTTGCCGCCAGTTCAAGTTCTCAAGACTGGAGAAATGGTGTTGGGGCCGTCGACGAAAGATACGATGTTATAGTTGTAGGAGGAGGACATGCGGGTTGTGAAGCTGCACTTGCATCTGCTCGTTTAGGGGCTAAAACTCTTCTTCTGACACTCAATATCGATCGAATTGCTTGGCAGCCTTGCAATCCAGCAGTAGGTGGGCCTGCAAAATCTCAACTCGTGCACGAAGTAGATGCACTCGGTGGTGAAATTGGCAAGGTCGCTGACAGATGTTATCTACAGAAGCGTGTACTTAACGTCTCTAGAGGCCCTGCAGTGCGGGCATTGCGTGCTCAAACTGATAAAAGGGAGTATGCAATTCAAATGAAAAGTATTGTGGAAAGCACTCCGAATCTTTCTATCAGAGAGGCAATGGTGACAGATATTTTAATAGGAAAGAATGACAATGTGGAAGGTGTTTGCACCTTTTTTGGAATGAATTTCTACGCATCTGCTGTTATTCTCACTACAGGAACATTCATGAGTGGCAAAATATGGGTTGGTAGAACTTCCATGCCTGCAGGAAGAGCTGGTGAATCAGCTTCACATGGACTCACTGAAAACTTACAACGTCTTGGATTTGAAATTGATCGGTTGAAAACAGGAACCCCAGCCCGAGTGGACTGTCGAACTGTGGACTTTTCTGCACTGGAACCTCAACATGGTGATGACGAGGTCAATTGGTTTAGTTTTGATCCTGATTTTCACATAGAGAGAGAGCAAATGTGCTGTTATCTGACTCGCACCACGAAGAGTACACATGAACTTATCAAGGAGAACCTGCATGAAACTCCTACTTATGGAGGCTGGGTGGAAGCAAAAGGGCCTAGATATTGCCCGTCCATTGAAGATAAGATTGTGAGGTTTCAAGACAAAGAGTCTCATCAAATTTTTCTTGAGCCAGAGGGCCGGAATGTGCCCGAGCTCTATGTGCAGGGATTCTCTACTGGTTTGCCAGAACGACTACAGTTGCCACTTTTGAGAACTTTACCAGGCCTTGAAAACTGTTCGATGCTTAGACCTGCATATGCCGTAGAGTATGATTTCTTGCCTGCTCATCAATGTAGAAGATCTCTTATGACCAAAAAAATTGATGGGCTTTTCTTCTCTGGTCAAATAAATGGAACCACAGGCTATGAAGAAGCAGCTGCACAAGGAATTCTATCTGGTATCAATGCTGCCAGATTTTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGGGAAAGTAGTTACATTGGGACCTTAATCGATGACCTCGTCACCAAGGACCTTCGTGAGCCTTATCGTATGTTGACAAGCCGCTCAGAACATCGACTACTTCTCCGATCCGACAATGCGGATAGCCGTCTTACACCTCTTGGCCGTGAAATTGGGTTGATAAATGATAGGCGCTGGAAACTATACCAAGAGAAGCAGGCTAGAATATCAGATGAGAAGAAGAGACTGAAAACTGTCAGGATATCAGGAGGAGAGCTGGCTGCTGATGTTTCTCTCCTGTCTGGTCAGCCTGTGAAGGACTATTCGACATTGGAGAGTCTTCTTAAGAAACCACACATAGGATATAACGTTTTTGATAAGCATGGCTTCGGGAATAAACTTTTAACCAAATCAGAAAAGGACTGTGTAGAGATTGATATCAAATATGAGGGTTTCATTCTGCGGCAGCAAACACAACTCCAGCAGATGGTTCATCAACAACACAGAGTACTTCCCGAAGACTTGGATTATTATGCAATGACAACATTGTCTCTTGAAGCCCGTGAAAAACTATCTAAGGTGAGACCACAAACTATCGGTCAAGCAAGTAGAGTTGGCGGAGTAAACCCAGCTGATATCACGGCTCTGCTCATCATCCTTGAATCCAACAGAAGGAAGGCTCAGGAAATGAAGCGGCATCAAATGCTCGGTTCCATCATTAGAGAATCTACGGATACAGAAGAACACCCTTCCGGAGTTAATTTAACCGAGGCAATCACCAAAGAAGTAGAAGCTATTACTGGAGGCTGTGCATCATTCTGTGGTGACAAGCCACAAGCAGTACCTTTAGGCAGCTGGGATTTTCAGGAAACTGATATACACGCTCGTAGTTCAGGGAATTTTGTCGATCGATTGAAGCGTAGTCGGGGCTACTGTAAACTTGTTTCCTTCTTGAACAATAATTTGTACAAAATGCATTTTCAGTGA 2394 45.03 MAASGLLAFHLPRLARHFPIPHSFNPSLSFHNLLARTKLPPRRPVILGRNCILRRSFVAASSSSQDWRNGVGAVDERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADRCYLQKRVLNVSRGPAVRALRAQTDKREYAIQMKSIVESTPNLSIREAMVTDILIGKNDNVEGVCTFFGMNFYASAVILTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRLGFEIDRLKTGTPARVDCRTVDFSALEPQHGDDEVNWFSFDPDFHIEREQMCCYLTRTTKSTHELIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCRRSLMTKKIDGLFFSGQINGTTGYEEAAAQGILSGINAARFSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLINDRRWKLYQEKQARISDEKKRLKTVRISGGELAADVSLLSGQPVKDYSTLESLLKKPHIGYNVFDKHGFGNKLLTKSEKDCVEIDIKYEGFILRQQTQLQQMVHQQHRVLPEDLDYYAMTTLSLEAREKLSKVRPQTIGQASRVGGVNPADITALLIILESNRRKAQEMKRHQMLGSIIRESTDTEEHPSGVNLTEAITKEVEAITGGCASFCGDKPQAVPLGSWDFQETDIHARSSGNFVDRLKRSRGYCKLVSFLNNNLYKMHFQ 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28020880 28029071 + CcPI632755_04g012680.1 Cco04g1268 176493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1268 797 Pfam tRNA modifying enzyme MnmG/GidA C-terminal helical bundle 631 686 IPR026904 -
Cco04g1268 797 Hamap tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 76 694 IPR004416 GO:0002098(InterPro)
Cco04g1268 797 Gene3D - 640 690 IPR044920 -
Cco04g1268 797 Pfam tRNA modifying enzyme MnmG/GidA C-terminal helical domain 532 626 IPR049312 -
Cco04g1268 797 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 78 692 IPR004416 GO:0002098(InterPro)
Cco04g1268 797 FunFam tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 71 296 - -
Cco04g1268 797 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 71 704 IPR002218 GO:0002098(PANTHER)|GO:0008033(InterPro)|GO:0030488(PANTHER)|GO:0050660(PANTHER)|GO:0050660(InterPro)
Cco04g1268 797 PRINTS Pyridine nucleotide disulphide reductase class-I signature 79 101 - -
Cco04g1268 797 PRINTS Pyridine nucleotide disulphide reductase class-I signature 223 232 - -
Cco04g1268 797 FunFam tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 531 620 - -
Cco04g1268 797 ProSitePatterns Glucose inhibited division protein A family signature 1. 345 359 IPR020595 -
Cco04g1268 797 SMART GIDA_assoc_3_2 616 687 IPR047001 -
Cco04g1268 797 Pfam Glucose inhibited division protein A 79 470 IPR040131 -
Cco04g1268 797 Gene3D - 71 299 IPR036188 -
Cco04g1268 797 Gene3D - 386 530 IPR036188 -
Cco04g1268 797 FunFam tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 639 692 - -
Cco04g1268 797 Gene3D - 531 620 - -
Cco04g1268 797 FunFam tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 385 530 - -
Cco04g1268 797 SUPERFAMILY FAD/NAD(P)-binding domain 77 332 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1268 K03495 - - csv:101219572 1377.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34