Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1273 ATGGATCCGGATCATCGTCGGAAAATAGACTACCGGTATATTGCCGATAATTTCAGCTCATTGGATCAGGTTATATCTGCATTGAGACACGAAGGTCTTGAATCATCAAATTTAATTCTTGGTATCGACTTTACGAAGAGTAATGAGTGGACAGGCAGGCATTCTTTCAGAAGAAAAAGTCTGCATTCAGTTAGCAGCACACCAAATCCATATGAGCAAGCAATTTCTATTATTGGTCAGACGTTGTCTCCTTTTGATGATGATGGTTTGATACCTTGTTTTGGTTTTGGTGATGCATCAACACGTGATAAGCATGTATTCAGCTTTTATCCAGATCACAGGCCATGTAAAGGTTTCAAGGAAGCACTTTCTCGATACAGAGAAATTCTGCCGTATCTGAATTTATCAGGTCCAACCTCATTTGCCCCTGTTATAGATGCTGCCATTGGCATTGTTGAGAAAAGCAATTGGCAGTATCATGTCCTTGTTATTGTTGCAGATGGACAGGTTACTAGAAATCCTGACACACCACCTGGTAAACTAAGTTTTCAAGAGCAGGCAACCATAAACTCCATTGTTGCTGCAAGCCATTATCCTCTGTCGATAATTCTAATCGGGGTAGGGGATGGACCTTGGGATGCTATGCGGAAATTTGATGATAACATCCCTCAGCGTGCATTTGATAATTTTCAGTTTGTAAACTTCACAAAGATCATGTCTGAGAGCACAGAAGCATCAAAGAAGGAAGCAGCATTTGCCCTGGCTGCACTCATGGAAATTCCATTTCAATACAGAGCGACCCTCTCTTTGCAATATTCAAAGAGAGAATCTGTATATGGAAAAAAGGCAGGGCCACTTCCTCCTCCTCCTGAAGTCATCAATCATGACAATGCAGTTGCAGAACAAAATTTGAAGAATCTAAATGCTGAAAAACAGAGTACCTCATCTGAATCGGTCTGTCCCATATGCCTGACAAACCCAAAGGACATGGCTTTTGCATGTGGTCATACAACCTGCAAGGATTGTGGCGTAACCATCTCAACGTGCCCATTGTGTCGAGAACCTATAAAGATGCGCTTGAGACTATATGCCTAA 1095 41.74 MDPDHRRKIDYRYIADNFSSLDQVISALRHEGLESSNLILGIDFTKSNEWTGRHSFRRKSLHSVSSTPNPYEQAISIIGQTLSPFDDDGLIPCFGFGDASTRDKHVFSFYPDHRPCKGFKEALSRYREILPYLNLSGPTSFAPVIDAAIGIVEKSNWQYHVLVIVADGQVTRNPDTPPGKLSFQEQATINSIVAASHYPLSIILIGVGDGPWDAMRKFDDNIPQRAFDNFQFVNFTKIMSESTEASKKEAAFALAALMEIPFQYRATLSLQYSKRESVYGKKAGPLPPPPEVINHDNAVAEQNLKNLNAEKQSTSSESVCPICLTNPKDMAFACGHTTCKDCGVTISTCPLCREPIKMRLRLYA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28074155 28079255 - CcPI632755_04g012730.1 Cco04g1273 176498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1273 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 364 IPR013083 -
Cco04g1273 364 ProSiteProfiles Zinc finger RING-type profile. 320 353 IPR001841 -
Cco04g1273 364 SMART VWA_4 35 235 IPR002035 -
Cco04g1273 364 Pfam Zinc finger, C3HC4 type (RING finger) 317 357 - -
Cco04g1273 364 SUPERFAMILY RING/U-box 309 359 - -
Cco04g1273 364 Pfam Copine 60 272 IPR010734 -
Cco04g1273 364 PANTHER COPINE FAMILY PROTEIN 1 6 363 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cco04g1273 364 SUPERFAMILY vWA-like 37 219 IPR036465 -
Cco04g1273 364 Coils Coil 297 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1273 K16280 - - csv:101214405 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1273 Cco-Chr4:28074155 Cco06g1948 Cco-Chr6:29701420 6.20E-121 dispersed
Cco04g1273 Cco-Chr4:28074155 Cco10g1358 Cco-Chr10:26626636 1.70E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1327 . Blo16g00578 . . . Bpe13g00067 . . Cmo02g00674 . Cma03g01108 Cma07g00810 Car03g01001 Car07g00797 . Cpe19g00513 Cpe10g00324 . . . . . . . Cla01g01491 Cam01g1559 Cec04g1206 Cco04g1273 Clacu01g1585 Cmu01g1474 Cre04g1155 . . Cone6ag1265 . Lsi01g01169 . . Cme08g01137 . . . . . . . . . Cmo03g01098 Cmo07g00840 . . . . . . . . . . . . . . . . . . . . . Csa06g02741 Chy02g01094 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55