Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1286 ATGGAGTTTCGCATTCTACAACAATCTCCATCGTGTTATGCAGGAAATGTCTTTTGCTCGGTCCAGCCCCGTTTGGGAATTCGGAAGTTTCTTAGTTTGGTTTCCACGAACACAACGATTTTGCAGAAGATATGTTCCCGAAATTATCCTAGGAGAAAGACACAGTACCGTTCGGAAGTTAATAGAGCGGCTGTACTCTGTTCAACTAGTTTAAATGACAGTACATTGGCGCAATATGATAACGTGAAAATCATTTATTCTGTAGCTGCTGCCACGGGTCATAATCAGGAATCTCATCCAGAATCTCATCTCAGGGTTCCTGCAATAGCGAATGCTCTTGAAGACATGGAACTCACACCTAAGTTTCAAGGCACAAATGTCATTGAACTTCAAAATTACAAACCTGCTTCAGTTGATGACATTGTGAGTGTTCATTCAAAGTCATACGTGGCAGGCCTTGAGAAGGCTATGGATAGGGCTTCTCAAGATGGACTTATTTTAATTGAAGGCTCTGGACCGACATATGCCACTGCCACCACATTTAATGAATCACTAGTTGCAGCTGGAGCAGGAATTTCTTTAGTTGATTCAGTGGTCAAAGCGTCACAAACCTACATGAATCCGCCAATTGGTTTTGCATTGATAAGACCTCCAGGACATCATGCAGTCCCCAAGGGACCGATGGGATTCTGTGTTTTTGGGAATGTAGCTATTGCAGCTCGTTATGCTCAACGTGTGCATGGATTGAAGCGTGTCTTTATTATTGATTTTGATGCTCACCATGGGAATGGAACGAGTGATGCATTCTATGACGATTCAGATATATTCTTCCTTTCAACTCACCAAGATGGAAGTTACCCTGGAACTGGTAAGATCGATGAAGTGGGTCATGGAGACGGGGAAGGAACAACTCTAAATATTCCTCTACCGGGAGGCTCAGGTGATTATGCCATGAAAATGGTGTTTGACGAAGTTATTGTACCCTGTGCTCAAAGATTTAAGCCTGATATCATTCTTGTCTCTGCTGGGTATGATGCTCATGTATTAGATCCATTAGCCAATCTGCAATTCACGACTGGAACATACTACATGCTCGCATCCAATATTAAACAACTGGCAAAAGAATTATGCCAGGGACGATGTGTTTTTTTTCTGGAAGGGGGTTACAACCTCGAGTCTCTTTCGTATTCAGTGGCTGATTCGTTCCGCGCATTTCTTGACGAGCCGAGCTTGGCGTCAGAGTTTGATAACCCTGCAATCTTGTATGAAGAACCATCAAGGAAATTTAAGCAAGTGATCCAGAAAGTGAAACAAATACATTCACTTTAA 1329 42.51 MEFRILQQSPSCYAGNVFCSVQPRLGIRKFLSLVSTNTTILQKICSRNYPRRKTQYRSEVNRAAVLCSTSLNDSTLAQYDNVKIIYSVAAATGHNQESHPESHLRVPAIANALEDMELTPKFQGTNVIELQNYKPASVDDIVSVHSKSYVAGLEKAMDRASQDGLILIEGSGPTYATATTFNESLVAAGAGISLVDSVVKASQTYMNPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDAHHGNGTSDAFYDDSDIFFLSTHQDGSYPGTGKIDEVGHGDGEGTTLNIPLPGGSGDYAMKMVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTGTYYMLASNIKQLAKELCQGRCVFFLEGGYNLESLSYSVADSFRAFLDEPSLASEFDNPAILYEEPSRKFKQVIQKVKQIHSL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28173770 28178840 - CcPI632755_04g012860.1 Cco04g1286 176511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1286 442 PANTHER HISTONE DEACETYLASE HDAC1-RELATED 89 441 IPR050284 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0004407(PANTHER)|GO:0005737(PANTHER)|GO:0008134(PANTHER)|GO:0016575(PANTHER)
Cco04g1286 442 Gene3D Histone deacetylase domain 68 441 IPR037138 -
Cco04g1286 442 CDD HDAC_classII 99 406 - -
Cco04g1286 442 PRINTS Histone deacetylase superfamily signature 251 266 IPR000286 -
Cco04g1286 442 PRINTS Histone deacetylase superfamily signature 217 240 IPR000286 -
Cco04g1286 442 PRINTS Histone deacetylase superfamily signature 335 345 IPR000286 -
Cco04g1286 442 Pfam Histone deacetylase domain 99 403 IPR023801 -
Cco04g1286 442 SUPERFAMILY Arginase/deacetylase 85 438 IPR023696 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1286 Cco-Chr4:28173770 Cco06g1765 Cco-Chr6:28112387 3.80E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32