Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1288 ATGGCTATAAATTTGTTCAAAACTGTACCCAAAGTTCAGACCTCCATTACTTCAAAACATTCAACCTCTCTGTTTTTCACCACCGGAAGTTCCTTCTCCCTCCCCTCATACCCTCCAGTTGCATTAGCGGTTTGTTCAATGTCTTATGAGAAGGAGCTCGCGGCTGCCAAGAAAGCGGCCTCTCTCGCCGCTCGTCTCTGCCAGAAAGTGCAGAAGGCATTGTTGCAATCTGATGTTCAATCGAAATCGGATAGAAGCCCAGTGACTGTAGCTGATTACGGTTCACAAGCACTGGTTAGCTTTGTACTGGAAAGGGAACTCCCTTCTGAACCCTTTTCATTGGTAGCTGAGGAGGATTCAGGAGATCTCCGAAAAGAGAGTGGCCAGGAAACATTACACCGCATTACTCAACTTGTAAACGAAACACTTTCTAGTGAGGGATCATATGGTGCTTCAACCTTAACGGCAGAAGATGTGCTTGGGGCTATTGACAATGGGAAATCTGAAGGAGGCCCTACTGGTCGACATTGGGTTTTGGATCCCATAGATGGGACAAAGGGATTTCTGAGAGGGGACCAATATGCTACTGCATTGGCATTGCTTGATGATGGGAAAGTAGTATTGGGCGTCCTAGCCTGTCCAAATCTACCCTTGCAACCAATTAGTAGCAATAATCAACCTTCTCTGCTTGGAGACGTTGGTTGTCTATTCTTTTCTACAGTTGGTGCAGGAACATATATGCAGTCACTAACTGGTTCTGCATTAACAAAGGTGAGTGTCAGTGCTATTGAAAATCCCGAAGAAGCATCCTTCTTTGAATCATATGAAGCTGCTCACTCTATGCATGACCTTACTAGCTCCATTGCACAAAAACTTGGTGTTAAAGCGCCGCCAGTGAGAATTGACAGTCAAGCAAAATATGGTGCCCTTTCCCGAGGAGATGGAGCCATATACCTTCGTTTTCCTCACAAAGGATACCGTGAAAAGATTTGGGACCATGCTGCTGGGTGCATTGTTGTTACAGAAGCTGGTGGAGTGGTTACGGATGCAGCTGGGAATGCACTGGATTTCTCTAGAGGAAGATATCTGGATCTGTATGAGGGTATCATTGTTACGAACCAGAGACTGATGCCATCACTCCTCAAGGCAGTTCAAGAAGCTCTTCAACAGACGGCTTCTTCAACCTTGTGA 1191 45.84 MAINLFKTVPKVQTSITSKHSTSLFFTTGSSFSLPSYPPVALAVCSMSYEKELAAAKKAASLAARLCQKVQKALLQSDVQSKSDRSPVTVADYGSQALVSFVLERELPSEPFSLVAEEDSGDLRKESGQETLHRITQLVNETLSSEGSYGASTLTAEDVLGAIDNGKSEGGPTGRHWVLDPIDGTKGFLRGDQYATALALLDDGKVVLGVLACPNLPLQPISSNNQPSLLGDVGCLFFSTVGAGTYMQSLTGSALTKVSVSAIENPEEASFFESYEAAHSMHDLTSSIAQKLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPHKGYREKIWDHAAGCIVVTEAGGVVTDAAGNALDFSRGRYLDLYEGIIVTNQRLMPSLLKAVQEALQQTASSTL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28186109 28189463 - CcPI632755_04g012880.1 Cco04g1288 176513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1288 396 PANTHER PHOSPHATASE 46 389 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Cco04g1288 396 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 48 391 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Cco04g1288 396 ProSitePatterns Inositol monophosphatase family signature 1. 177 190 IPR020583 -
Cco04g1288 396 FunFam SAL1 phosphatase 47 258 - -
Cco04g1288 396 SUPERFAMILY Carbohydrate phosphatase 49 388 - -
Cco04g1288 396 Gene3D - 259 390 - -
Cco04g1288 396 Gene3D - 47 257 - -
Cco04g1288 396 PRINTS Inositol monophosphatase superfamily signature 328 352 IPR000760 -
Cco04g1288 396 PRINTS Inositol monophosphatase superfamily signature 86 106 IPR000760 -
Cco04g1288 396 CDD PAP_phosphatase 65 386 - -
Cco04g1288 396 FunFam PAP-specific phosphatase HAL2-like 259 390 - -
Cco04g1288 396 Pfam Inositol monophosphatase family 84 387 IPR000760 -
Cco04g1288 396 ProSitePatterns Inositol monophosphatase family signature 2. 331 345 IPR020550 GO:0046854(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1288 K15422 - - csv:101204881 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1288 Cco-Chr4:28186109 Cco11g1890 Cco-Chr11:31602252 4.90E-71 dispersed
Cco04g1288 Cco-Chr4:28186109 Cco03g0564 Cco-Chr3:5766818 1.40E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32