Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1290 ATGGCTATCGTTGAATCGATTCTTGATCTTCAGGTACAAGATCCGCCAGAGGAAGAGTTCTATTCAGCTGATTTGACTTGGACCAAGTTTGGCACTGTTGAACACCATGATGAAGTAGCTTTGATTCCTTATGCCCGAGTAGATGCATTTATAATTGGCGAATGTACTAATATAGAATGCCCGACCCGGTTTCATATTGAGAGGGGAAGGAAGCGATCGAGGGCTAGCTTGAAAGAGTTCAAGGATGATGAATATTTGGAATATCGACAATATTGGTGCTCGTTTGGTCCTGAAAATTATGGGGAAGGTGGAAGTATATTACCTAGTAGAAGATATAGGCTTAACACTCGAAATCGTGCTGCTAGACCTCAATCAATGCGAGGTTGTACCTGCCATTTTGTTGTAAAGAGACTGTACGCTCGTCCATCTCTGGCACTTATAATATATAATGAGAGGCGTCATGTGAACAAGTCTGGCTTTGTATGCCATGGGCCGCTTGACAGAGAGGCCATTGGCCCTGGTGCCAAAAAGATTCCATATATTTGTAATGAGATCCAACAGCAGACAATGTCAATGATTTATTTGGGAATTCCTGAGGTAAACATTGTGGAGAAACATCTTGAGTGTCTTCAGCGATATTGTGGTACAAATGCAAAAGCTAACAGTCTTGCTTCCCAGTATGTTCACAAACTTGGGATGATCATTAAACGGTCTACCCATGAGCTGGATCTGGATGATCAAGCTAGCATTAGCATGTGGGTGGAGCGCAATAAAAAATCAATATTTATTCATCAGGATTCTTCAGAAGAAAATCCGTTCATTCTTGGGATTCAAACAGAATGGCAATTGCAACAGATGATTCGGTTTGGCCATCGTAGTCTCATTGCTGCTGATTCAACGTTTGGCATTAAGAGGCTTAAGTATCCCCTGTGTACACTTCTCGTGTTTGATTCTAGACAGCATGCACTCCCTGTTGCATGGATCATCACTCGCAGCTTTGCAAAATCAGATGTATCCAAATGGATGAAAGCCTTACTTGACCGTGCTCATTCTGTAGAGCCTGGATGGAAAGTTAGTGGGTTTTTAATTGATGATGCAGCCACGGAGATTGATCCTATCATGGACATATTCTGTTGTCCTGTGCTTTTTTCCCTCTGGCGCATTCGTCGGTCATGGTTAAAAAATGTTGTTCGGAAATGCAGTAGCATTGAAGTTCAGAGGGAAATATTCAAACGGCTGGGAAAATTGGTGTACAGCATTTGGGACGGAATTGATACTTCGGTTGTCTTGGAAGATCTCACCCGTGATTTTGTTGACCAAACTGCTTTCATGGAATATTTCAAGGGTTGTTGGGTGCCAAAGATTGAAATGTGGCTTTCTGCGATGAGAGCTTTTCCACTTGCAAGCCAAGAGGCATCTGGTGCTATTGAGGCCTACCACATGAAGTTGAAGGCAAAACTATTTGATGACTCTCATCTTGGTGCTTTCCAGAGGGTGGATTGGTTGGTTCACAAGTTGACCACTGAATTGCATTCAACCTACTGGCTAGATCGCTATGCTGATGAAAGTGATTCATTTCAAAATGTCAAGGAGGAGTATATTTCTTCTACTTCTTGGCACCGTGCACTGCAAATTCCAGATTCTTCAGTTACCTTGGATGAGGAAAATCACCTGTTTGCCAAAGTTGTGAGCCAAAAGGACACCGGCGTTTCACATGTAGTTTGGAATCCAGGGTCGGAATTCTCATTTTGTGATTGTTCTTGGTCGATGCAAGGAAATCTTTGCAAACATGTGATCAAGGTGAATATGGTATGTGAAAATTTCCTGAGTTACAAACCTTCCTTGTCTTTTCAATCATTTGAGGAGATATTGATGAATATATGGAAACTACCAATGGATGATTCTGTTGCTTTGGATGTGTCAATGGCTTGGACCCATCAGATTCTTGATGAAGTTCAGAAACTTGTTGAATTGAATTCTTCAAATGATATTAGCTCTGTGGTAAATAAGCTGCCCTTGAAATGGGCTTCTGGGAAGGGAAGAACCAGTTTTAGGAAACCATCATCTACCGTGGCTTTTCCATCAGAGTCCAATACTGTCAAAAAGGCCATGCCAAAGAAGAACCAGAAAAGGAAAAGCTTGTCATCAATAAGATAA 2157 41.77 MAIVESILDLQVQDPPEEEFYSADLTWTKFGTVEHHDEVALIPYARVDAFIIGECTNIECPTRFHIERGRKRSRASLKEFKDDEYLEYRQYWCSFGPENYGEGGSILPSRRYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNKSGFVCHGPLDREAIGPGAKKIPYICNEIQQQTMSMIYLGIPEVNIVEKHLECLQRYCGTNAKANSLASQYVHKLGMIIKRSTHELDLDDQASISMWVERNKKSIFIHQDSSEENPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKSDVSKWMKALLDRAHSVEPGWKVSGFLIDDAATEIDPIMDIFCCPVLFSLWRIRRSWLKNVVRKCSSIEVQREIFKRLGKLVYSIWDGIDTSVVLEDLTRDFVDQTAFMEYFKGCWVPKIEMWLSAMRAFPLASQEASGAIEAYHMKLKAKLFDDSHLGAFQRVDWLVHKLTTELHSTYWLDRYADESDSFQNVKEEYISSTSWHRALQIPDSSVTLDEENHLFAKVVSQKDTGVSHVVWNPGSEFSFCDCSWSMQGNLCKHVIKVNMVCENFLSYKPSLSFQSFEEILMNIWKLPMDDSVALDVSMAWTHQILDEVQKLVELNSSNDISSVVNKLPLKWASGKGRTSFRKPSSTVAFPSESNTVKKAMPKKNQKRKSLSSIR 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28191974 28194948 + CcPI632755_04g012900.1 Cco04g1290 176515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1290 718 PANTHER ZINC ION BINDING PROTEIN 1 695 - -
Cco04g1290 718 MobiDBLite consensus disorder prediction 704 718 - -
Cco04g1290 718 Pfam SWIM zinc finger 574 602 IPR007527 GO:0008270(InterPro)
Cco04g1290 718 MobiDBLite consensus disorder prediction 679 718 - -
Cco04g1290 718 MobiDBLite consensus disorder prediction 682 697 - -
Cco04g1290 718 ProSiteProfiles Zinc finger SWIM-type profile. 571 606 IPR007527 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1290 Cco-Chr4:28191974 Cco09g0622 Cco-Chr9:5503507 5.20E-172 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1308 . Blo16g00544 . . . Bpe13g00041 Bma09g00223 . . . . Cma07g00806 Car03g00990 . . . Cpe10g00332 . . . . . . . Cla01g01509 Cam01g1577 Cec04g1221 Cco04g1290 Clacu01g1603 Cmu01g1490 Cre04g1169 . . Cone6ag1278 . . . . . . . Bda11g01386 . . . . . . Cmo03g01084 Cmo07g00833 . . . . . . . . . . . . . . . . . . . . . Csa06g02773 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008884 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 34