Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1293 | ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCTCTCTTAACCTCTTCAAGTCTTCTTCCCCCAGAACTCAACCTAAGAACCCCACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGAGTTTCACACGCAATTCCCCGAGGTCCAGCAGGGATCTGGGCTCTTCTGGCGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAAAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCGAGTTCGGTCTCCAGTATTAGTTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTGCAATTTGGAGCTTACAGAGGATTTGTCGATACGAGAATCGAGACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCTCTCAATCCACGGCTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGCCCTTCTTCCTTGAGCAGCACGAGAGCTATCAATATCGGCGATAATAACGCAGCTATACAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTGCTCAGTCAGCTGTCACATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGATGAGTCGCTCTCAGTCTACTTAGAATACATCTCCGGTGGCTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATAAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGCGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTTAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTTGCTGCCATTTTCAAAATTGGTAATAGTAGAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAATTTTGTGCTATTATGTTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGACCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCACGGATGCGTTCCTCTTTAGCATCGATGGAATCCAGACTCCACCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGCGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGGAGTTCTAGGGGAAATGGAAGATTCACATCCTTGCCCGGCTCTCCATGTTCGAGTCCAATAACCGGACACCAGAGCTATTATCTTTCACCACCTCACTCATCTCACATGGGGATGAGTCAAAGCGGATACAATTTGAATGAATACACGTATAACACGAGACCGAACACATTGTTCACCCTTGATCCTTTGCGAGATTCATCGCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGAACTCTTTGA | 1821 | 45.8 | MPLGWVKKLSRNKDHHNHPTSSLNLFKSSSPRTQPKNPTHKPKSFDEVSAVSFTRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSISSSGSSDDHPSAQEQLQFGAYRGFVDTRIETRPRSPGPGSKGPTSPTSPLNPRLCGMSLESPTTHKLPLPPSPSSLSSTRAINIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGDESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLADFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSRDIPEIPDHLSNDAKNFVLLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSTDAFLFSIDGIQTPPLLDRHPNRKSISICDGDYVTNPTFSSRAPRSSRGNGRFTSLPGSPCSSPITGHQSYYLSPPHSSHMGMSQSGYNLNEYTYNTRPNTLFTLDPLRDSSLLKVQTHLGSPRRTL | 606 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28210022 | 28214098 | - | CcPI632755_04g012930.1 | Cco04g1293 | 176518 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1293 | 606 | Pfam | Protein kinase domain | 210 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1293 | 606 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 27 | 472 | IPR050538 | - | |
Cco04g1293 | 606 | ProSiteProfiles | Protein kinase domain profile. | 209 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1293 | 606 | MobiDBLite | consensus disorder prediction | 518 | 540 | - | - | |
Cco04g1293 | 606 | MobiDBLite | consensus disorder prediction | 21 | 38 | - | - | |
Cco04g1293 | 606 | MobiDBLite | consensus disorder prediction | 49 | 79 | - | - | |
Cco04g1293 | 606 | CDD | STKc_MEKK1_plant | 208 | 465 | - | - | |
Cco04g1293 | 606 | FunFam | Mitogen-activated protein kinase kinase kinase | 207 | 488 | - | - | |
Cco04g1293 | 606 | MobiDBLite | consensus disorder prediction | 103 | 125 | - | - | |
Cco04g1293 | 606 | SMART | serkin_6 | 209 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1293 | 606 | ProSitePatterns | Protein kinases ATP-binding region signature. | 215 | 238 | IPR017441 | GO:0005524(InterPro) | |
Cco04g1293 | 606 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 482 | - | - | |
Cco04g1293 | 606 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Cco04g1293 | 606 | MobiDBLite | consensus disorder prediction | 143 | 190 | - | - | |
Cco04g1293 | 606 | SUPERFAMILY | Protein kinase-like (PK-like) | 207 | 551 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1704 | Cco-Chr2:29775836 | Cco04g1293 | Cco-Chr4:28210022 | 6.00E-77 | dispersed | |
Cco03g0937 | Cco-Chr3:11998882 | Cco04g1293 | Cco-Chr4:28210022 | 9.70E-62 | dispersed | |
Cco04g1293 | Cco-Chr4:28210022 | Cco05g0981 | Cco-Chr5:8613008 | 8.10E-118 | dispersed | |
Cco04g1293 | Cco-Chr4:28210022 | Cco01g0480 | Cco-Chr1:4710016 | 1.30E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86749 | PF00069 | Pkinase | 1.10E-71 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1293 | K04421 | - | csv:101203907 | 996.497 |