Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1305 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACTCTGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGCCCCCGACCTCGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTATTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGAAACGTGCGGATTAGTGATGACCCGCAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTGCCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGCTGCAGTCAAGTCAGCCGCCGCAACAGCCAACCACCAGCGGTGGAGCCGCCGCTGCAGGCGGAGGATGGCCTTTTCCTTTCAATAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGTGA 669 52.02 MDPHHLPNPSSHLHHSAMEDHHIDLHHHHHAPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPTTSGGAAAAGGGWPFPFNKANGSTSSSTSMETTPAITPSGW 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28325894 28326660 - CcPI632755_04g013050.1 Cco04g1305 176530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1305 222 MobiDBLite consensus disorder prediction 199 222 - -
Cco04g1305 222 MobiDBLite consensus disorder prediction 48 66 - -
Cco04g1305 222 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
Cco04g1305 222 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 8 209 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1305 222 MobiDBLite consensus disorder prediction 174 222 - -
Cco04g1305 222 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
Cco04g1305 222 CDD bHLH_AtIND_like 117 174 - -
Cco04g1305 222 MobiDBLite consensus disorder prediction 48 81 - -
Cco04g1305 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 175 IPR036638 GO:0046983(InterPro)
Cco04g1305 222 FunFam BHLH transcription factor 119 183 - -
Cco04g1305 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
Cco04g1305 222 Gene3D - 119 182 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0864 Cco-Chr3:10164392 Cco04g1305 Cco-Chr4:28325894 3.10E-09 dispersed
Cco04g1305 Cco-Chr4:28325894 Cco05g2262 Cco-Chr5:31350406 2.30E-33 dispersed
Cco04g1305 Cco-Chr4:28325894 Cco08g1786 Cco-Chr8:28991233 1.30E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59054 PF00010 HLH 1.30E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1305 - - - 0.0