Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1310 ATGCTGAGCTCTGATGGAGACACAGATGTTTTCTTTGATTCAGAAGATTACTTGCCATTAGAGGAGTCCTTGGTAGCTGAAGAGCCGGATTTCAGCAAGTTGGGATATGAAATATGGATGAGTGAGCCTCAGAGCATTAAGAAGAGAAGGGAACGTTTTCTTCAAGAAGTTGGTTTGGTTGAATTTGCATCTTCTAGTACTTGTACACAGGATTCAGAGATTGAATCTACTAGTTCATCAGAGAGGATGGAATTGAAGAGACTTACAGAATGTAGTGGAGCTGTCTCAAGCTCTGACTATACACCCAGCTGTAATGTGGAAGGCAATGATTCGGTAGTATGCCACAATGAGATGCAAAGTGCTGAATTTATCAACAAGGCAACCAGTCGTCCGTCTACTGTTTCCAACTCCAGCTTTCAACGGTGCCACGGTGAAGCCAATGTTGAAGCTTGCCAGGGTATTGATGCACGTAAAAAGAAAATAATGACTTGGTGGAAATCACTTAAGAACAAGGCAGTAAGACGAAGGAGTATAGAGCTTTCTGGGGAATCAAAATCGAATCCAGTAAAATCCAAAAGTTGTAGAATTAAGGTGTACCAACACAAAAAGAGGTGTTCAGAATTTAGTGCATTGTATATGAGACAACAGATTTGTGCACACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGATGGCAAGTATTTGGCAAGCGGAGGAGAAGACGGAATTGTACGCATTTGGCGTGTAACATGTGCAAATGCCTCTAGTGAGTTTTTAGCAAACGATGAGAATTGTAACACCAAACCAAGAGAAGGAAAGTCTAGTTTCAGCAGCAAATCGTTAAAATTTGCCACTGTTGTCATTCCTGAAAAGGTTTTTCAGATTGAGGGGTCGCCAATACAAGAATTCCATGGACATTCAAGTGATGTCTTGGACATAGCTTGGTCTAATTCAAACTGTCTTCTGTCATCCTCAAAGGATAAAACCGTGCGCTTGTGGCAAGTCGGTTCTGACCAATGTCTCAATGTTTTTCACCATAAAAACTATGTGACTTGTATCCAATTCAATCCAATGGATGAAAACTACTTTCTCAGTGGCTCAATTGATGGCAAAATCCGGATTTGGGGTGTCAAGAACCAGCGCGTAGTTGATTGGGCCGATATCCGAGATGTAATTACCGCTATATCTTATCGACCAGATGGAAAGGGATTTGTTGTTGGTTCTATTACTGGCAGTTGTCGTTTCTACAAAACATCAGGTGATTATCTTCATCTGGATGCACAGATCAACGTTCAAGGTAGAAAAAAAGCCTCGGGCAAAAGGATCACTGGCATTCAGTTTTGCCTGGAAAATTGTCAAAGAGTGATGATAACTTCGGAAGACTCTAAAGTACGCATATTCGAAGGAACCGAAATCATCTGCAAATACAAAGGTCTACCGAAGTCGGGGAGTCAGATTTCTGCCTCCTTCACGAAAAATGGGAAACATATAGTATCGGTCGGAGAGGACTCTCGTGTATATATGTGGAACTACGATAGTCTTCGCCTTCCGTCGACGAAAGAAACGAAATCTCAGCAGTCTTGTGAGCATTTCTTTTCTGATGGTGTGTCTATTGCAATACCATGGCCTGGCATTGGAACTGAACCAAAGGGCTTTGGTAAAAACCAACCACGGTTTTCACGGAGAAAGGAATACCAAAGGGCTGCTTCTTGGACAAGAGACTTGGAGCGTTTTTCGCTCGGTAATTGGTTCTCTGCCGAGGTTTTGCACCGAGCTTCTGCAACATGGCCAGAAGAGAGACTACCTCTCTGGGATTTACCAACTGCAGAGGATGAACATGGCAACCTGCAACACCAAGATTGTCATCAAAAGAAACTAAATGGTCATTGCTATGCCTACGATCACGGAACATGGGGCCTTGTGATCGTGGTGGCCGGATTAGATGGAACTATAAAGACATTCCACAACTATGGATTGCCTATCAAGCTTTAG 1995 42.66 MLSSDGDTDVFFDSEDYLPLEESLVAEEPDFSKLGYEIWMSEPQSIKKRRERFLQEVGLVEFASSSTCTQDSEIESTSSSERMELKRLTECSGAVSSSDYTPSCNVEGNDSVVCHNEMQSAEFINKATSRPSTVSNSSFQRCHGEANVEACQGIDARKKKIMTWWKSLKNKAVRRRSIELSGESKSNPVKSKSCRIKVYQHKKRCSEFSALYMRQQICAHKGLIWTMKFSPDGKYLASGGEDGIVRIWRVTCANASSEFLANDENCNTKPREGKSSFSSKSLKFATVVIPEKVFQIEGSPIQEFHGHSSDVLDIAWSNSNCLLSSSKDKTVRLWQVGSDQCLNVFHHKNYVTCIQFNPMDENYFLSGSIDGKIRIWGVKNQRVVDWADIRDVITAISYRPDGKGFVVGSITGSCRFYKTSGDYLHLDAQINVQGRKKASGKRITGIQFCLENCQRVMITSEDSKVRIFEGTEIICKYKGLPKSGSQISASFTKNGKHIVSVGEDSRVYMWNYDSLRLPSTKETKSQQSCEHFFSDGVSIAIPWPGIGTEPKGFGKNQPRFSRRKEYQRAASWTRDLERFSLGNWFSAEVLHRASATWPEERLPLWDLPTAEDEHGNLQHQDCHQKKLNGHCYAYDHGTWGLVIVVAGLDGTIKTFHNYGLPIKL 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28376148 28379102 - CcPI632755_04g013100.1 Cco04g1310 176535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 PANTHER WD REPEAT DOMAIN 44 11 663 IPR040324 -
Cco04g1310 664 Gene3D - 201 537 IPR015943 GO:0005515(InterPro)
Cco04g1310 664 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
Cco04g1310 664 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Cco04g1310 664 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Cco04g1310 664 FunFam WD repeat-containing protein 44 201 543 - -
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 386 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SMART WD40_4 338 377 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SMART WD40_4 210 249 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SMART WD40_4 429 469 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SMART WD40_4 379 418 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SMART WD40_4 297 335 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SMART WD40_4 470 511 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 Pfam WD domain, G-beta repeat 487 511 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 Pfam WD domain, G-beta repeat 340 376 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 Pfam WD domain, G-beta repeat 298 334 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 Pfam WD domain, G-beta repeat 217 248 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 SUPERFAMILY WD40 repeat-like 211 654 IPR036322 GO:0005515(InterPro)
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 336 - -
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 344 IPR001680 GO:0005515(InterPro)
Cco04g1310 664 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1310 K20241 - - csv:101207772 1139.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1310 Cco-Chr4:28376148 Cco11g1873 Cco-Chr11:31376737 2.60E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49