Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1311 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATATCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCACCAACAACTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGACGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGATTCTGCGGAAAGGTACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCAGAGAACGATACAACCCTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTTCAGCTGGGAGTGATAAAATCGGTAACGAAGCTTCTCTCGGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAGAGCAATTGTTCGGCACCGGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.92 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQQLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTTLKMDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28423546 28424772 - CcPI632755_04g013110.1 Cco04g1311 176536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1311 408 SUPERFAMILY ARM repeat 166 394 IPR016024 -
Cco04g1311 408 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cco04g1311 408 CDD RING-Ubox_PUB 11 63 IPR045210 -
Cco04g1311 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 99 IPR013083 -
Cco04g1311 408 PANTHER WDSAM1 PROTEIN 7 407 IPR045185 GO:0061630(InterPro)
Cco04g1311 408 Gene3D - 156 397 IPR011989 -
Cco04g1311 408 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1311 408 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco04g1311 408 SUPERFAMILY RING/U-box 6 79 - -
Cco04g1311 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1311 Cco-Chr4:28423546 Cco07g0588 Cco-Chr7:7959886 9.30E-33 dispersed
Cco02g0041 Cco-Chr2:475484 Cco04g1311 Cco-Chr4:28423546 7.40E-35 transposed
Cco05g2930 Cco-Chr5:36788473 Cco04g1311 Cco-Chr4:28423546 2.90E-27 transposed
Cco08g1844 Cco-Chr8:29445225 Cco04g1311 Cco-Chr4:28423546 1.70E-35 transposed
Cco02g0063 Cco-Chr2:644858 Cco04g1311 Cco-Chr4:28423546 1.20E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1311 - - - 0.0