Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1311 | ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATATCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCTTCACCAACAACTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGACGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGATTCTGCGGAAAGGTACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCAGAGAACGATACAACCCTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATGCCGAAACGGATCAAAATCAAATTAGTTCAGCTGGGAGTGATAAAATCGGTAACGAAGCTTCTCTCGGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAGAGCAATTGTTCGGCACCGGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA | 1227 | 47.92 | MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQQLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTTLKMDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28423546 | 28424772 | - | CcPI632755_04g013110.1 | Cco04g1311 | 176536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1311 | 408 | SUPERFAMILY | ARM repeat | 166 | 394 | IPR016024 | - | |
Cco04g1311 | 408 | FunFam | RING-type E3 ubiquitin transferase | 2 | 82 | - | - | |
Cco04g1311 | 408 | CDD | RING-Ubox_PUB | 11 | 63 | IPR045210 | - | |
Cco04g1311 | 408 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 99 | IPR013083 | - | |
Cco04g1311 | 408 | PANTHER | WDSAM1 PROTEIN | 7 | 407 | IPR045185 | GO:0061630(InterPro) | |
Cco04g1311 | 408 | Gene3D | - | 156 | 397 | IPR011989 | - | |
Cco04g1311 | 408 | SMART | Ubox_2 | 13 | 76 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco04g1311 | 408 | Pfam | U-box domain | 10 | 78 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco04g1311 | 408 | SUPERFAMILY | RING/U-box | 6 | 79 | - | - | |
Cco04g1311 | 408 | ProSiteProfiles | U-box domain profile. | 9 | 83 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1311 | Cco-Chr4:28423546 | Cco07g0588 | Cco-Chr7:7959886 | 9.30E-33 | dispersed | |
Cco02g0041 | Cco-Chr2:475484 | Cco04g1311 | Cco-Chr4:28423546 | 7.40E-35 | transposed | |
Cco05g2930 | Cco-Chr5:36788473 | Cco04g1311 | Cco-Chr4:28423546 | 2.90E-27 | transposed | |
Cco08g1844 | Cco-Chr8:29445225 | Cco04g1311 | Cco-Chr4:28423546 | 1.70E-35 | transposed | |
Cco02g0063 | Cco-Chr2:644858 | Cco04g1311 | Cco-Chr4:28423546 | 1.20E-109 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1311 | - | - | - | 0.0 |