Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1320 | ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCAGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGACGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCATGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCCGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA | 1134 | 47.88 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28536646 | 28538090 | + | CcPI632755_04g013200.1 | Cco04g1320 | 176545 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1320 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Cco04g1320 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Cco04g1320 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Cco04g1320 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Cco04g1320 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Cco04g1320 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Cco04g1320 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Cco04g1320 | 377 | FunFam | Major actin | 261 | 340 | - | - | |
Cco04g1320 | 377 | FunFam | Actin, muscle | 182 | 273 | - | - | |
Cco04g1320 | 377 | SUPERFAMILY | Actin-like ATPase domain | 148 | 377 | IPR043129 | - | |
Cco04g1320 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
Cco04g1320 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
Cco04g1320 | 377 | FunFam | Putative actin-related protein 5 | 341 | 369 | - | - | |
Cco04g1320 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Cco04g1320 | 377 | Gene3D | - | 140 | 340 | - | - | |
Cco04g1320 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Cco04g1320 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Cco04g1320 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Cco04g1320 | 377 | Gene3D | - | 10 | 371 | - | - | |
Cco04g1320 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Cco04g1320 | 377 | FunFam | Actin, alpha skeletal muscle | 3 | 180 | - | - | |
Cco04g1320 | 377 | PANTHER | ACTIN | 8 | 369 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1010 | Cco-Chr4:25717641 | Cco04g1320 | Cco-Chr4:28536646 | 2.20E-214 | dispersed | |
Cco04g1320 | Cco-Chr4:28536646 | Cco10g1738 | Cco-Chr10:30921785 | 2.00E-215 | dispersed | |
Cco05g2877 | Cco-Chr5:36379907 | Cco04g1320 | Cco-Chr4:28536646 | 1.60E-59 | transposed | |
Cco09g1453 | Cco-Chr9:19627487 | Cco04g1320 | Cco-Chr4:28536646 | 2.10E-212 | transposed | |
Cco11g0743 | Cco-Chr11:8225807 | Cco04g1320 | Cco-Chr4:28536646 | 1.30E-96 | transposed | |
Cco02g0067 | Cco-Chr2:714053 | Cco04g1320 | Cco-Chr4:28536646 | 7.80E-209 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1320 | K10355 | - | csv:101215469 | 758.059 |