Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1320 ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCAGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGACGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCATGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCCGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 47.88 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28536646 28538090 + CcPI632755_04g013200.1 Cco04g1320 176545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1320 377 PRINTS Actin signature 51 62 IPR004000 -
Cco04g1320 377 PRINTS Actin signature 63 85 IPR004000 -
Cco04g1320 377 PRINTS Actin signature 142 161 IPR004000 -
Cco04g1320 377 PRINTS Actin signature 28 37 IPR004000 -
Cco04g1320 377 PRINTS Actin signature 117 130 IPR004000 -
Cco04g1320 377 PRINTS Actin signature 238 254 IPR004000 -
Cco04g1320 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cco04g1320 377 FunFam Major actin 261 340 - -
Cco04g1320 377 FunFam Actin, muscle 182 273 - -
Cco04g1320 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cco04g1320 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cco04g1320 377 SMART actin_3 7 377 IPR004000 -
Cco04g1320 377 FunFam Putative actin-related protein 5 341 369 - -
Cco04g1320 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cco04g1320 377 Gene3D - 140 340 - -
Cco04g1320 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cco04g1320 377 Pfam Actin 5 377 IPR004000 -
Cco04g1320 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cco04g1320 377 Gene3D - 10 371 - -
Cco04g1320 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cco04g1320 377 FunFam Actin, alpha skeletal muscle 3 180 - -
Cco04g1320 377 PANTHER ACTIN 8 369 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1010 Cco-Chr4:25717641 Cco04g1320 Cco-Chr4:28536646 2.20E-214 dispersed
Cco04g1320 Cco-Chr4:28536646 Cco10g1738 Cco-Chr10:30921785 2.00E-215 dispersed
Cco05g2877 Cco-Chr5:36379907 Cco04g1320 Cco-Chr4:28536646 1.60E-59 transposed
Cco09g1453 Cco-Chr9:19627487 Cco04g1320 Cco-Chr4:28536646 2.10E-212 transposed
Cco11g0743 Cco-Chr11:8225807 Cco04g1320 Cco-Chr4:28536646 1.30E-96 transposed
Cco02g0067 Cco-Chr2:714053 Cco04g1320 Cco-Chr4:28536646 7.80E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1320 K10355 - csv:101215469 758.059