Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1325 | ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTCGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCACCACCTTTTGAAATTTCACAAGTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAAACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTGTGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCATTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAGTCCAATCTTTTGTAATAGCTATTGCAATGGAAAGAGATCCTTCTGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGCGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTTATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAATAATAATCAAACAGATGTATCTGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACTTGCTGAGCCATAG | 1026 | 39.28 | MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHKSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTVQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVSVPPQLPKDLTEMRSLAEP | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28566979 | 28571228 | - | CcPI632755_04g013250.1 | Cco04g1325 | 176550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1325 | 341 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 21 | 128 | - | - | |
Cco04g1325 | 341 | Pfam | EamA-like transporter family | 164 | 302 | IPR000620 | GO:0016020(InterPro) | |
Cco04g1325 | 341 | Pfam | EamA-like transporter family | 10 | 121 | IPR000620 | GO:0016020(InterPro) | |
Cco04g1325 | 341 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 203 | 306 | - | - | |
Cco04g1325 | 341 | PANTHER | WAT1-RELATED PROTEIN | 1 | 316 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0072 | Cco-Chr2:758651 | Cco04g1325 | Cco-Chr4:28566979 | 1.10E-56 | dispersed | |
Cco02g0073 | Cco-Chr2:770456 | Cco04g1325 | Cco-Chr4:28566979 | 2.20E-89 | dispersed | |
Cco04g1322 | Cco-Chr4:28544378 | Cco04g1325 | Cco-Chr4:28566979 | 4.10E-114 | dispersed | |
Cco04g1325 | Cco-Chr4:28566979 | Cco04g1327 | Cco-Chr4:28604781 | 3.10E-114 | dispersed | |
Cco04g1325 | Cco-Chr4:28566979 | Cco04g1326 | Cco-Chr4:28581671 | 5.60E-116 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1325 | - | - | - | 0.0 |