Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1325 ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTCGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGCTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCACCACCTTTTGAAATTTCACAAGTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAAACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTGTGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCATTGGAGTTTGTAAGTTACCAAACACTCTTAAGCACAGTCCAATCTTTTGTAATAGCTATTGCAATGGAAAGAGATCCTTCTGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGCGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTTATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAATAATAATCAAACAGATGTATCTGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACTTGCTGAGCCATAG 1026 39.28 MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKAFGILVCIGGVITLAFYKGPYLKPLINHHLLKFHKSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTVQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVSVPPQLPKDLTEMRSLAEP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28566979 28571228 - CcPI632755_04g013250.1 Cco04g1325 176550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1325 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
Cco04g1325 341 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020(InterPro)
Cco04g1325 341 Pfam EamA-like transporter family 10 121 IPR000620 GO:0016020(InterPro)
Cco04g1325 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 306 - -
Cco04g1325 341 PANTHER WAT1-RELATED PROTEIN 1 316 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0072 Cco-Chr2:758651 Cco04g1325 Cco-Chr4:28566979 1.10E-56 dispersed
Cco02g0073 Cco-Chr2:770456 Cco04g1325 Cco-Chr4:28566979 2.20E-89 dispersed
Cco04g1322 Cco-Chr4:28544378 Cco04g1325 Cco-Chr4:28566979 4.10E-114 dispersed
Cco04g1325 Cco-Chr4:28566979 Cco04g1327 Cco-Chr4:28604781 3.10E-114 dispersed
Cco04g1325 Cco-Chr4:28566979 Cco04g1326 Cco-Chr4:28581671 5.60E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1325 - - - 0.0