Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1331 ATGGAAGGAAGAGCTAAAAGGAAACTTGCAAGACGGGGCCAGCTAGTTTTGCTAAGGGGACTCACTTTACCGTGTGCGGGGAATCCTGGAAGATATGCGTTTCTAGTCGATTTTCCAATGTTGGGTAGACTCATTGCTGGGTCTCACAATAGAAATGAGTTTATTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCCGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGCTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTATGAGTATGAGAGAAGAGAGGGGAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAGGGCAGTCCTAGGGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGACAACGAGTTCGACTATGGAAACCTCGATGCTTTGGGCCCTCATCATGCTGCAGAGGGAATGTACTCGCACCTTAACACCGGCCGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCAGAGCACGAACCATCTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGCGAGGAGGATTATGAAATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTAATGGAAATAGAGTCCATCCAATGCCTTCCCCTGATCGATCAAGTCCTTCTCAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGTTGATGATGATGGAAATGATATCGATGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTGCCTATCTCTTCGAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTAGGCCTGTTTTTTCATTACCGAATTCTTCATCCAGTTAAAGATGCTTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGCATCGTGGATTCTCGACCAGTTCCCAAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATAGGCTTTCATTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCAATGAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTTAATATTGAGCCCCGTGCCCCAGAATTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAATTTAAGGTTAGGGTAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCAGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGATCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGACCAGGGTTTGAACATCACAAAAAGGCTGGTGCCATGAATGCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGACATGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCTATATATGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTATATGGATATGATGCTCCTTCCAAGAAGAAACCCCCAAGTAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAACAATCCGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTCGAGAATATCGAGGAGGGAATCGAAGACCTAAGTATAGAGAAATTGAATGCGTCTGAAATAAAATTGGCGAAAAAATTCGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGAGGAGTTCCCCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTGATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCTGTGTACTGTATTCCCAAGAGACCCGCGTTTAAAGGGTCGGCTCCAATCAATCTCTCAGATCGATTACACCAAGTTCTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGATATGGAGGCGGGTTGAAATGGTTGGAGCGATTTTCATACATAAACTCAGTGGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCAACCGGTATCCTTGAGATGCAATGGGGTGGTGTTGGGATTGACGACTGGTGGAGAAACGAACAGTTCTGGGTTATTGGAGGCGTTTCGTCACATCTTTTTGCTCTCTTTCAAGGTCTACTGAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTCACATCGAAAGCAGCGGATGATGGTGAATTTTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACAACCTTGTTGATCATAAACATTGTCGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGGTACGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAGGGATTGTTAGGGAAACAAGACCGGTTACCGACAATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGTATGATGTAGATAGAGGGGATTGGGTTGGTTGGAGTGTTGAATTGAATGCCACTCTATTGACTTTCCATTTGAATTTCAACTTTGAATCGCATTGTTCTTCACCTGAAAACTATGGATCCTCAACTGTTCCTTGTGTTTTCCTTGACATCAATCAGAAGGTTTTTTATCCTCGTATCTGTGCTGATATCGTCCAAGCTGAATGTTTTGTGTTTCTTTTGTCATAG 3540 42.99 MEGRAKRKLARRGQLVLLRGLTLPCAGNPGRYAFLVDFPMLGRLIAGSHNRNEFILINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDALGPHHAAEGMYSHLNTGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGNGNRVHPMPSPDRSSPSQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVDDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNPKKKKTKHREASKQIHALENIEEGIEDLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWYDVDRGDWVGWSVELNATLLTFHLNFNFESHCSSPENYGSSTVPCVFLDINQKVFYPRICADIVQAECFVFLLS 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28661699 28668986 + CcPI632755_04g013310.1 Cco04g1331 176556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1331 1179 MobiDBLite consensus disorder prediction 719 738 - -
Cco04g1331 1179 ProSiteProfiles Zinc finger RING-type profile. 76 122 IPR001841 -
Cco04g1331 1179 SUPERFAMILY Nucleotide-diphospho-sugar transferases 414 945 IPR029044 -
Cco04g1331 1179 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 554 693 IPR029044 -
Cco04g1331 1179 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 313 1096 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cco04g1331 1179 FunFam Cellulose synthase 58 149 - -
Cco04g1331 1179 FunFam Cellulose synthase 518 692 - -
Cco04g1331 1179 MobiDBLite consensus disorder prediction 174 195 - -
Cco04g1331 1179 Pfam Zinc-binding RING-finger 66 142 IPR027934 -
Cco04g1331 1179 CDD mRING-HC-C4C4_CesA 74 124 - -
Cco04g1331 1179 SUPERFAMILY RING/U-box 62 148 - -
Cco04g1331 1179 Pfam Cellulose synthase 401 1109 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cco04g1331 1179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 149 IPR013083 -
Cco04g1331 1179 MobiDBLite consensus disorder prediction 722 737 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1331 Cco-Chr4:28661699 Cco08g0285 Cco-Chr8:5178292 0.00E+00 dispersed
Cco04g1331 Cco-Chr4:28661699 Cco10g1101 Cco-Chr10:23307788 3.80E-236 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1331 K10999 - csv:101211094 2109.72