Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1347 ATGATACCCTTTTTCCCATCTTCTTCAAATTCCTTTCTGAGGGTCTTTTTCTTCTTTGTCTCTCTTACTCTTCTCTCCTTCTCTGCCTCCTCTGTTACTCCCTCTTCTTCTTCTCATGGAGACACCCAGAAACTCGTTTCCTTTAAATCTTCACTTCCAAACCCAACCCTTCTTCAGAACTGGCTCTCCAATGCCGACCCATGTTCGTTTTCTGGTATTACTTGTAAGGAAACCAGAGTCTCCGCTATAGACTTGAGCTTCTTGTCTTTGAGCTCTAATTTCAGTCATGTGTTTCCTTTGCTTGCGGCTCTTGACCATTTGGAATCGCTTTCTCTTAAATCCACTAACCTCACTGGCTCCATTTCTTTGCCCTCTGGATTCAAGTGTAGCCCTCTGCTTTCTTCTGTAGATCTGTCTCTCAATGCCTTGTTTGGTTCTGTTTCTGATGTCTCCAACTTGGGGTTTTGCCCTAATGTTAAGTCGCTTAATCTGTCCTTTAACTCTTTTGATTTTCCTCTTAAAGACTCTGCCCCTGGATTGAAGCTTGATTTGCAGGTTCTTGATCTTTCTTCTAACCGGATTGTTGGGTCTAGATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAATTTGCAGCACTTGGCATTGAAGGGAAACAAAATCAGCGGCGAGATTAATCTATCATCTTGTAATAAACTCGAGCATTTGGATATCTCTGGCAACAATTTCTCTGTGGGTATTCCGTCCTTAGGTGATTGCTCTGTTTTGGAACATTTTGATATCTCCGGCAATAAGTTTACCGGCGACGTCGGACATGCTCTGTCGTCTTGTCAGCAACTCACCTTTCTGAATCTCTCCAGCAACCAGTTCGGGGGGCCAATCCCTCAGTTTGCATCGTCCAATTTGTGGTTTCTTTCACTTGCTAACAACGATTTCCAAGGGGAGATTCCTGTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTCGATCTTTCTTCTAATAGTTTGATTGGGGCTTTGCCTACGGCTATGGGGTCTTGTTCTTCGTTGCAAACTTTAGACATTTCGAAAAATAATCTCACTGGTGAACTCCCCATTGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCAGACAACAAGTTTTTTGGGGTTTTGTCAGATTCTCTGTCTCAGCTCGCCATTTTGAATTCTTTGGATCTGAGTTCCAATAACTTTTCTGGGTCGATTCCGGCGGGGCTATGTAAAGACCCTAATAACAACTTGAAAGAACTGTTTCTTCAGAACAATTGGTTAACAGGTCGAATCCCTGCGAGTATTAGTAATTGTTCACAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTTAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAGCAACTTTCAAGGGCTCGAGAATCTGATCCTGGATTTCAATGAGCTCAATGGGACCATCCCTTCCGGGTTAAGCAACTGTACCAACTTGAACTGGATTTCATTGTCGAACAACCGGTTGAGCGGAGAGATTCCCGCCTGGATTGGGAGTTTACCAAGCCTTGCCATCCTTAAGCTCAGCAACAACTCGTTCTACGGTAGGATTCCTCGGGAGCTCGGCGATTGTCGGAGCTTGATCTGGCTTGACCTTAATACCAATCTCTTGAATGGAACAATCCCGCCGGAGTTGTTTCGTCAATCGGGTAACATTGCTGTTAACTTTATCACAGGGAAGTCTTATGCTTACATCAAGAATGATGGTAGTAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTTCTGGAATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCTTGCAATTTCACTAGGGTTTATAAAGGAATGACTCAGCCCACTTTTAACCATAATGGCTCCATGATCTTTCTTGATCTTTCCCACAATATGTTGTCTGGTAGTATTCCTAAGGAGATTGGTTCTACAAACTATCTCTACATTTTGGATTTGGGACATAACAGTCTCTCGGGACCGATTCCACAGGAGCTCGGCGACTTGATGAAACTTAACATTCTTGATCTCTCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAATGGTTCGATACCCGAATCAGCTCAGTTTGAAACATTCCCGGCATCTGGTTTTGCAAATAATTCTGGCCTCTGTGGGTATCCTCTCCCTCCATGTGTGGTTGATTCAGCAGCAAATGCAAATTCTCAGCATCAGAGATCTCATAGGAAACAGGCATCCCTTGCAGGGAGTGTTGCAATGGGGTTACTCTTCTCCCTCTTCTGTATTTTCGGTCTGATTATCGTCGTTATTGAGATGAGGAAGAGAAAGAAAAAGAAGGATTCTACTCTTGATTCTTATGTTGAGAGTCATTCCCAATCAGGCACAACCACCGCCGTTAACTGGAAGTTAACTGGTGCCCGTGAAGCATTGAGCATCAATCTTGCAACGTTTGAGAAGCCATTAAGAAAGCTTACATTCGCTGATCTTCTCGAAGCTACTAATGGCTTCCACAACGATAGCCTGATTGGTTCAGGGGGTTTTGGTGACGTATATAAGGCTCAATTGAAGGATGGAAGCACTGTAGCCATCAAGAAGCTAATTCATGTCAGTGGTCAGGGTGATCGAGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTACCGCTTTTAGGCTACTGTAAAGTAGGAGAAGAACGGCTTCTGGTATACGAGTACATGAAATATGGAAGCCTCGAGGACGTTTTACACGACCAGAAGAAAGGCGGGATCAAACTGAATTGGGCAGCAAGAAGAAAAATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCATAGGGACATGAAATCAAGCAATGTCCTACTGGATGAGAATTTGGAAGCCAGAGTCTCAGATTTTGGAATGGCAAGACTAATGAGTGCCATGGACACTCATTTGAGTGTCAGCACATTAGCCGGAACACCCGGTTATGTCCCTCCCGAATATTACCAAAGCTTCCGGTGTTCTACAAAAGGCGACGTTTACAGTTATGGTGTCGTTATGCTCGAGCTCTTAACAGGAAAACGACCTACAGACTCTGCAGATTTCGGAGACAACAATCTCGTCGGATGGGTAAAACAACACGCCAAGTTGGACCCAACCGATGTTTTCGATCCTGAACTCATAAAGGAGGATCCAAGCCTCAAGTTAGAGCTTTTAGAACACTTGAAGGTAGCTGTTTCTTGCTTAGACGATAGGTCATGGCGGCGTCCAACCATGATCCAGGTAATGACAATGTTCAAGGAAATCCAAGCGGGGTCGGGGATGGATTCACAATCTACGATCGGAACTGACAACGGAGGATTCAGTGTCGACATGGTAGATATGAGCTTAAAAGAAGTACCAGAGCCAGAAGGCAAGTAA 3600 44.14 MIPFFPSSSNSFLRVFFFFVSLTLLSFSASSVTPSSSSHGDTQKLVSFKSSLPNPTLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLSSVDLSLNALFGSVSDVSNLGFCPNVKSLNLSFNSFDFPLKDSAPGLKLDLQVLDLSSNRIVGSRLVPWIFSGGCGNLQHLALKGNKISGEINLSSCNKLEHLDISGNNFSVGIPSLGDCSVLEHFDISGNKFTGDVGHALSSCQQLTFLNLSSNQFGGPIPQFASSNLWFLSLANNDFQGEIPVSIADLCSSLVELDLSSNSLIGALPTAMGSCSSLQTLDISKNNLTGELPIAVFAKMSSLKKLSVSDNKFFGVLSDSLSQLAILNSLDLSSNNFSGSIPAGLCKDPNNNLKELFLQNNWLTGRIPASISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELNGTIPSGLSNCTNLNWISLSNNRLSGEIPAWIGSLPSLAILKLSNNSFYGRIPRELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFSGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNSLSGPIPQELGDLMKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPPCVVDSAANANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRKKKKDSTLDSYVESHSQSGTTTAVNWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSTVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDPTDVFDPELIKEDPSLKLELLEHLKVAVSCLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGGFSVDMVDMSLKEVPEPEGK 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28812791 28816390 + CcPI632755_04g013470.1 Cco04g1347 176572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1347 1199 ProSitePatterns Protein kinases ATP-binding region signature. 893 916 IPR017441 GO:0005524(InterPro)
Cco04g1347 1199 SMART LRR_typ_2 349 372 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 568 591 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 184 206 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 543 567 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 373 396 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 324 348 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 397 421 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 495 519 IPR003591 -
Cco04g1347 1199 SMART LRR_typ_2 731 754 IPR003591 -
Cco04g1347 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1009 1021 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1347 1199 SUPERFAMILY L domain-like 653 772 - -
Cco04g1347 1199 PRINTS Leucine-rich repeat signature 707 720 - -
Cco04g1347 1199 PRINTS Leucine-rich repeat signature 351 364 - -
Cco04g1347 1199 SUPERFAMILY RNI-like 273 587 - -
Cco04g1347 1199 Pfam Brassinosteroid receptor island domain 593 657 IPR045381 -
Cco04g1347 1199 Pfam Leucine Rich Repeat 686 707 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 733 751 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 450 471 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 425 447 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 709 731 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 664 682 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 279 296 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine Rich Repeat 232 250 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 SUPERFAMILY Protein kinase-like (PK-like) 873 1163 IPR011009 -
Cco04g1347 1199 FunFam serine/threonine-protein kinase BRI1-like 2 848 962 - -
Cco04g1347 1199 FunFam Brassinosteroid LRR receptor kinase 963 1164 - -
Cco04g1347 1199 SMART serkin_6 887 1159 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1347 1199 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 654 776 - -
Cco04g1347 1199 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 423 512 - -
Cco04g1347 1199 Pfam Protein kinase domain 887 1156 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1347 1199 Gene3D Ribonuclease Inhibitor 45 776 IPR032675 -
Cco04g1347 1199 CDD STKc_IRAK 893 1162 - -
Cco04g1347 1199 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Cco04g1347 1199 ProSiteProfiles Protein kinase domain profile. 887 1162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1347 1199 FunFam Leucine-rich repeat receptor protein kinase EMS1 513 603 - -
Cco04g1347 1199 FunFam Serine/threonine-protein kinase BRI1-like 1 600 657 - -
Cco04g1347 1199 SUPERFAMILY L domain-like 38 297 - -
Cco04g1347 1199 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 205 422 - -
Cco04g1347 1199 PANTHER RECEPTOR-LIKE PROTEIN 55 464 1157 - -
Cco04g1347 1199 Gene3D - 598 658 - -
Cco04g1347 1199 Gene3D Phosphorylase Kinase; domain 1 848 962 - -
Cco04g1347 1199 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Pfam Leucine rich repeat 497 555 IPR001611 GO:0005515(InterPro)
Cco04g1347 1199 Gene3D Transferase(Phosphotransferase) domain 1 963 1164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0716 Cco-Chr1:7600847 Cco04g1347 Cco-Chr4:28812791 1.50E-144 dispersed
Cco04g1347 Cco-Chr4:28812791 Cco09g0341 Cco-Chr9:3012592 1.60E-77 dispersed
Cco04g1347 Cco-Chr4:28812791 Cco05g0956 Cco-Chr5:8373359 2.00E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86752 PF00069 Pkinase 4.20E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1347 K13415 - csv:101209118 2250.71