Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1348 ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATCAAGAGGCGGCCGCCGTGAACGCCGCCGCTATAACCACCAATTTCATATCTTTTCCCGAAGCCAACAACAACAACAATAACAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACAATATTTCTGTCAACAACAACAACAATCCCTTTTCCCTTTTTTCTTACCTTCAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTGTCCTTCCTCTCTCTGGGATGAAAGGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATGTTGGTGACGACGATAACGACGACGAATGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTTCATCCAAGAAGTTACTATCGTTGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAAAGATTAGCCGATGATCCAAGAATGGTGATAACAACTTATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG 738 43.63 MRSSASEEEIMVSLFQADQEAAAVNAAAITTNFISFPEANNNNNNNNVVVQQSLKPFSFSTQQYFCQQQQQSLFPFFLPSTTAPSNLLSSHNTPCPSSLWDERERFMRGRNNGIGNYVGDDDNDDECKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28833947 28836381 - CcPI632755_04g013480.1 Cco04g1348 176573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1348 245 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1348 245 FunFam WRKY transcription factor 57 149 223 - -
Cco04g1348 245 SMART WRKY_cls 163 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1348 245 Gene3D WRKY domain 146 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1348 245 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 224 IPR044810 GO:0003700(InterPro)
Cco04g1348 245 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco04g1348 245 SUPERFAMILY WRKY DNA-binding domain 155 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0098 Cco-Chr2:1096902 Cco04g1348 Cco-Chr4:28833947 6.80E-47 dispersed
Cco04g1348 Cco-Chr4:28833947 Cco05g0011 Cco-Chr5:119245 3.60E-32 dispersed
Cco04g1348 Cco-Chr4:28833947 Cco04g1355 Cco-Chr4:28936246 4.10E-20 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59059 PF03106 WRKY 4.40E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1348 - - - 0.0