Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1348 | ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATCAAGAGGCGGCCGCCGTGAACGCCGCCGCTATAACCACCAATTTCATATCTTTTCCCGAAGCCAACAACAACAACAATAACAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACAATATTTCTGTCAACAACAACAACAATCCCTTTTCCCTTTTTTCTTACCTTCAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTGTCCTTCCTCTCTCTGGGATGAAAGGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATGTTGGTGACGACGATAACGACGACGAATGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTTCATCCAAGAAGTTACTATCGTTGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAAAGATTAGCCGATGATCCAAGAATGGTGATAACAACTTATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG | 738 | 43.63 | MRSSASEEEIMVSLFQADQEAAAVNAAAITTNFISFPEANNNNNNNNVVVQQSLKPFSFSTQQYFCQQQQQSLFPFFLPSTTAPSNLLSSHNTPCPSSLWDERERFMRGRNNGIGNYVGDDDNDDECKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28833947 | 28836381 | - | CcPI632755_04g013480.1 | Cco04g1348 | 176573 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1348 | 245 | Pfam | WRKY DNA -binding domain | 164 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1348 | 245 | FunFam | WRKY transcription factor 57 | 149 | 223 | - | - | |
Cco04g1348 | 245 | SMART | WRKY_cls | 163 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1348 | 245 | Gene3D | WRKY domain | 146 | 223 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1348 | 245 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 41 | 224 | IPR044810 | GO:0003700(InterPro) | |
Cco04g1348 | 245 | ProSiteProfiles | WRKY domain profile. | 158 | 223 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco04g1348 | 245 | SUPERFAMILY | WRKY DNA-binding domain | 155 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0098 | Cco-Chr2:1096902 | Cco04g1348 | Cco-Chr4:28833947 | 6.80E-47 | dispersed | |
Cco04g1348 | Cco-Chr4:28833947 | Cco05g0011 | Cco-Chr5:119245 | 3.60E-32 | dispersed | |
Cco04g1348 | Cco-Chr4:28833947 | Cco04g1355 | Cco-Chr4:28936246 | 4.10E-20 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59059 | PF03106 | WRKY | 4.40E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1348 | - | - | - | 0.0 |