Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1378 | ATGGTAAGATTCATCTTCCTCCTTGCAAACCCTTCTCCTTCTCACAGTGATTATAGCTGCTGTTTAATTAGAATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAGTCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGATTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAATCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAA | 759 | 40.97 | MVRFIFLLANPSPSHSDYSCCLIRMANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQSSTRGQHADNVLKNLLLLVGVFVILALLWW | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29159777 | 29161099 | + | CcPI632755_04g013780.1 | Cco04g1378 | 176603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1378 | 252 | CDD | RING-HC_AtRMA-like | 56 | 100 | - | - | |
Cco04g1378 | 252 | SMART | ring_2 | 58 | 98 | IPR001841 | - | |
Cco04g1378 | 252 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 41 | 112 | - | - | |
Cco04g1378 | 252 | Pfam | Zinc finger, C3HC4 type (RING finger) | 57 | 98 | - | - | |
Cco04g1378 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 33 | 244 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Cco04g1378 | 252 | MobiDBLite | consensus disorder prediction | 122 | 143 | - | - | |
Cco04g1378 | 252 | SUPERFAMILY | RING/U-box | 54 | 111 | - | - | |
Cco04g1378 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 112 | IPR013083 | - | |
Cco04g1378 | 252 | ProSitePatterns | Zinc finger RING-type signature. | 73 | 82 | IPR017907 | - | |
Cco04g1378 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 99 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1378 | Cco-Chr4:29159777 | Cco07g0291 | Cco-Chr7:2945262 | 1.70E-24 | dispersed | |
Cco04g1378 | Cco-Chr4:29159777 | Cco08g1720 | Cco-Chr8:28515573 | 4.20E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1378 | K10666 | - | csv:101205026 | 444.506 |