Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1378 ATGGTAAGATTCATCTTCCTCCTTGCAAACCCTTCTCCTTCTCACAGTGATTATAGCTGCTGTTTAATTAGAATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAGTCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGATTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAATCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAA 759 40.97 MVRFIFLLANPSPSHSDYSCCLIRMANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQSSTRGQHADNVLKNLLLLVGVFVILALLWW 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29159777 29161099 + CcPI632755_04g013780.1 Cco04g1378 176603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1378 252 CDD RING-HC_AtRMA-like 56 100 - -
Cco04g1378 252 SMART ring_2 58 98 IPR001841 -
Cco04g1378 252 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 41 112 - -
Cco04g1378 252 Pfam Zinc finger, C3HC4 type (RING finger) 57 98 - -
Cco04g1378 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 33 244 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cco04g1378 252 MobiDBLite consensus disorder prediction 122 143 - -
Cco04g1378 252 SUPERFAMILY RING/U-box 54 111 - -
Cco04g1378 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 112 IPR013083 -
Cco04g1378 252 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Cco04g1378 252 ProSiteProfiles Zinc finger RING-type profile. 58 99 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1378 Cco-Chr4:29159777 Cco07g0291 Cco-Chr7:2945262 1.70E-24 dispersed
Cco04g1378 Cco-Chr4:29159777 Cco08g1720 Cco-Chr8:28515573 4.20E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1378 K10666 - csv:101205026 444.506