Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1384 ATGGGAATCGCTAAAGGCCCATTAATTTTGTCCAATAAGGCAACTGGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCTTGGATAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGAGAAGCTCCGACTCGACGCCTTCTCCGCCGCGATTCCGCCATCTACGGTGGCCGAAATAGACGAACACCACCCCCACCACCACCAACAACAACTTCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCCCCGTTCCCGTCGAATTCTCCGACAATTTCCGAACTTTACGCCCTCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCGCGATCTCCATCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTACAAACGCTCTTCAGGGTTTCGAAGGTGGGGTTGGTGTCGGAGATCAAACGGCTTTCGGTCAATTCGCTGTCGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCCTCTTTACAACACTTGGAGGACGCGGCCGCTGCTGCTGCCGCCGTCGCGAAAGCAGATGAATTGAGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCTTGATGGAGGCGATGGAGGAAGTGGATCAACATCATCAATTTTGCACTATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTCCACAAATAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTAAATGTGTTGAGGAATTCAAAATATGCCAAACCTGCACAAGAATTGCTCGAGGAGTTTTGTAGTGTTGGCAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCGATACCGAAACCGCCACCACCTCTGCCGCCGCTACTGGTAGCTCGACATCAAAGGATCAACCTCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAACGTAGGTACAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTCATGGGGTTCGGAGCAGCAGCGCCTTACACAACGTTGACGCAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATTGCCGAGCAGCTAAAGCAGAGCTACGAAGCGTTGGGGGAGAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGGAAAGTGGATACAGATGAATCACAAGATGACACCACACACAATAATAATAATAATAAAACCCAAAACAATCCCATAAATAATTCACAAAATCCAACACCCACCACTGCTCCACCACCCTCAGCCAGCACCGTGGAAGAAGTAGCGGCGGAGTTCACGGCGGCGCATGAGTACTCAGATCTTCATGATGTGTGGCGACATGGAAGTAGTGGAGATCATCAACAACATTATGGGACCATGTCTGCAGATGTTACAACTGCGGCGGCTGACATGCATCCTGGACCAACACTTATAAGATTTGGGACCACAAATACGGCCACCGGTGACGTGTCCCTAACTTTAGGCCTCCGCCACACCGGAAATACCTCCGCCGCCGCCGCCGCAGATAACCCTTCTTTCTCCCTAAGAGACTTTGGTCACTCTTGA 2091 48.59 MGIAKGPLILSNKATGCANSSMSHDYHHHHHQGIFTFSNGTLDKSNSSTLPQHIRPEKLRLDAFSAAIPPSTVAEIDEHHPHHHQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAPVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPPSTSSTLHMLLPNPPTNALQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAAAAAAVAKADELRIRDGGILYNYNNNNNQVLDGGDGGSGSTSSILHYSFRNNENSPHSFQAPQIMNPNHQVQIGFGSSLGVVNVLRNSKYAKPAQELLEEFCSVGKVQLKKNKFNIKPNPDTETATTSAAATGSSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDESQDDTTHNNNNNKTQNNPINNSQNPTPTTAPPPSASTVEEVAAEFTAAHEYSDLHDVWRHGSSGDHQQHYGTMSADVTTAAADMHPGPTLIRFGTTNTATGDVSLTLGLRHTGNTSAAAAADNPSFSLRDFGHS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29223308 29228270 + CcPI632755_04g013840.1 Cco04g1384 176609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1384 696 ProSiteProfiles 'Homeobox' domain profile. 483 546 IPR001356 GO:0003677(InterPro)
Cco04g1384 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 223 580 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco04g1384 696 Pfam Homeobox KN domain 503 542 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco04g1384 696 CDD homeodomain 486 547 IPR001356 GO:0003677(InterPro)
Cco04g1384 696 Gene3D - 489 551 - -
Cco04g1384 696 MobiDBLite consensus disorder prediction 332 368 - -
Cco04g1384 696 MobiDBLite consensus disorder prediction 138 165 - -
Cco04g1384 696 SUPERFAMILY Homeodomain-like 487 554 IPR009057 -
Cco04g1384 696 MobiDBLite consensus disorder prediction 558 601 - -
Cco04g1384 696 SMART prehox3 297 434 IPR006563 -
Cco04g1384 696 MobiDBLite consensus disorder prediction 141 157 - -
Cco04g1384 696 Coils Coil 373 400 - -
Cco04g1384 696 Pfam Associated with HOX 302 433 IPR006563 -
Cco04g1384 696 MobiDBLite consensus disorder prediction 336 360 - -
Cco04g1384 696 MobiDBLite consensus disorder prediction 569 586 - -
Cco04g1384 696 SMART HOX_1 486 550 IPR001356 GO:0003677(InterPro)
Cco04g1384 696 FunFam BEL1-like homeodomain protein 4 489 551 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1393 Cco-Chr2:26181962 Cco04g1384 Cco-Chr4:29223308 1.40E-131 dispersed
Cco03g0301 Cco-Chr3:3333136 Cco04g1384 Cco-Chr4:29223308 1.60E-62 dispersed
Cco04g0963 Cco-Chr4:25281301 Cco04g1384 Cco-Chr4:29223308 3.50E-52 dispersed
Cco04g1384 Cco-Chr4:29223308 Cco11g0420 Cco-Chr11:4344386 7.80E-72 dispersed
Cco04g1384 Cco-Chr4:29223308 Cco10g1818 Cco-Chr10:31809157 3.10E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59063 PF07526 POX 8.30E-49 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1384 - - - 0.0