Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1409 ATGGGCAGGCCAAAGAAGGTTTCAAAGCCGACACCTTTTCAGTGGTTGCTGTACTTAATTAAACAGCACATCTTACTGGTGGCGGCACTAAGGTTTCTGAGTAGCCATGGCCGATTTCCAGACCTCGACTCAACGGGCCAAATGGATCTTGTCTCCTCAGGAGCTGGTTCAGGAGCATATTTTGTTTATTTAGATTGCTTTATCAAGCAACTGGAGTTTCTTACTTCTATGGTTTACAGGTACAAAGCTGCTAACCAGAGAGCGATCGAAGCTCTGGAGAAGTTTGGAGCAACACTAATGGAAGTAGATGCTGACGGATCATTGTCATATCCAGACCCTCAGATAAATTCAAAAGATAATACTGACAAACACTCTCGCTCCAAATCGTTGAGTATTGAAGAAGAGCAATTTATGCGAGTATTTTATGAAAACAAACTTCAAGAAGTATGCAACAACTTTCATTTTCCTCATAAAATCCAGGCAACAGCTCTAATATATTTTAAAAGATTCTACCTACAATGGTCCGTGATGCAGCATAACCCAAAAAATGTGATGTTAACCTGCATATATGCAGCTTGTAAGATAGAAGAAAATCACGTCTCGGCTGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATTATTCTCAATTATGAGATGATAGTTTATCAGAGTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCAGTTGAAGGCTATGTAAATGATATCGAGGAACTCTTCAATGAGAATGTTGAAATGCTTCAAATGCTAAAGCAAACAGCATCATTAGAGGTTGATAAAATTATGTTAACAGATGCCCCACTTCTCTTCCCCCCTGGGCAGTTAGCACTGGCTGCATTGCGCAGATCAAATGAAGTTCATGGAGTTATTGACTTTGATTGCTACCTGGATAGTATCCTCTCTCGCCAGAATTCTGCACATACAATTTCCGAGCTCTACGAGCGTATAAATTCAATTGAATCATTGGTTAATAGATATACATTCCCTTCAGAAAAGGATTTAAAGCACATCAACCGAAAACTAAAATCTTGCTGGGGGCTGGGCTCCAATGACGAGTATATTTTATTCAATCATGCGATACCTTAA 1119 39.68 MGRPKKVSKPTPFQWLLYLIKQHILLVAALRFLSSHGRFPDLDSTGQMDLVSSGAGSGAYFVYLDCFIKQLEFLTSMVYRYKAANQRAIEALEKFGATLMEVDADGSLSYPDPQINSKDNTDKHSRSKSLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHNPKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSVEGYVNDIEELFNENVEMLQMLKQTASLEVDKIMLTDAPLLFPPGQLALAALRRSNEVHGVIDFDCYLDSILSRQNSAHTISELYERINSIESLVNRYTFPSEKDLKHINRKLKSCWGLGSNDEYILFNHAIP 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29488834 29503467 + CcPI632755_04g014090.1 Cco04g1409 176634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1409 372 Pfam Cyclin, N-terminal domain 132 231 IPR006671 -
Cco04g1409 372 SUPERFAMILY Cyclin-like 236 357 IPR036915 -
Cco04g1409 372 Gene3D - 234 336 - -
Cco04g1409 372 FunFam Cyclin h 234 336 - -
Cco04g1409 372 CDD CYCLIN_AcCycH_rpt2 234 355 - -
Cco04g1409 372 FunFam cyclin-H1-1 120 232 - -
Cco04g1409 372 SUPERFAMILY Cyclin-like 124 233 IPR036915 -
Cco04g1409 372 CDD CYCLIN_AcCycH_rpt1 75 231 - -
Cco04g1409 372 SMART cyclin_7 144 225 IPR013763 -
Cco04g1409 372 Gene3D - 120 232 - -
Cco04g1409 372 PANTHER CYCLIN 118 356 IPR043198 GO:0000079(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0016538(InterPro)|GO:0016538(PANTHER)|GO:0070816(PANTHER)|GO:0070985(PANTHER)
Cco04g1409 372 Pfam Cyclin C-terminal domain 236 334 IPR031658 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1409 K06634 - csv:101220754 545.814