Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1421 | ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCTTCAATGGTGAGAATTCCGGGAACTGGTACAGGTGGTGATTCTCCAACCAGAAGGACTACTACCAGAGGCTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGACGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCTGAGCCTGTCTCTTTGTCGCGATCGCCGAGTACTTCTGATGACCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCCCTTATTTCAGCGTCGTGAAGGAATCTCCAATTCGAATTCTGCAGGTGGAGATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGATGCGGTGGGGACGATCGCGATGTAGATAGAGATAGAACTACACCTCCTCATAAGATTGGGGGTGCGGCTTCCCCTACCGCTCCGATTAAAAGTATATCTGATTCCGGGGAAAAGCAGAAGAAAGAAGATCAGGATGAGACAAGGTCATCTGGGAGGGCGAATCAAGATGCAAGAGGATATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGCCCCCAAAGAAATAGGTCCGGTAACCTTTCAAATTTCTATCATGTGATTCCAGTAGGAAACCAAGGCTGGTCTTCACCTGAGCTACCAAGTTTCCCTTATGCTGCTCCAGTTGGAAATCATGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCCTTCTTTGATTGCTCCACTCTTAGTTCTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTACATCTCCATTTCACACCAAGATTTCCCTTGAAACACATGCTGTGCGCCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCCCCTGGAGTGCCAATGCCTTCAGCATCAATCCCATCAATGGCTTCACCATCAACCTCCATGCCTCTACAATCAACCCCTGTGCCTTCCCCATCAATTCCAATGCCTTCAGCGTCATCCCCAATGGCTTCACCATCAACCCCAATGGCTTCACAATCAACCTCAATTACACAAGCTAACACCAAAACGGAGTCGACCTCAATGAAAAATAAATGGCAGAAAGGAAAGCTTATAGGCCGGGGCACATTCGGAAGTGTGTATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGACGATCCGAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCACCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTTGGCACATTCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTTTCTCTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTACTTCTGTCTGTGATGCAGAAAGATAACAGCCCAGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATAAGAGATACCCCACCAATACCTGAAACATTATCATATGAAGCCAGTGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGACCGACCGCTGCAATGCTGCTTGAACATCCATTCATGAAAAACTTGCAGCATCCAGATGCTTCATCTTGCTCTCAGGCCGTTGCTGGGGCAAGTTTGATGGATAAATGCTATAGCCCAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAACTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCTACCATCTCGTCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAATACTGTCTCCTCCGCGCTCGGTTCCAAATGTGCACCATCTCGGTTCCCCTACAAATGTGGCAGGCCTGCCTCCAGCTTTGCTCGCACCTTCAATCGATGAGCATTTGGCAAGGGTGTTAAAGTATCGGCGAAAGATCAGCTTCATGACAAGAAGCCAGACTCAGATGCTGCGTCTAGTAGAGCTTCTGGTCTGGAAGTCTACACCATACTGGGAGTTGAGAAACAATTTTGTATGCTGCTTTTTCCATTTTAAAGCTTCAGTAATGGCGACATCCACTTATCCTTCCTTGGTGTTGGCGTGGGAAAATCACCACTTCCATAGTTCAATGTACAACTTCAAACTGAATTTGTAA | 2640 | 46.82 | MRWLRNISFTPSSMVRIPGTGTGGDSPTRRTTTRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERDATSLAKWSDTTPEPVSLSRSPSTSDDHAVPLPLPEVSPLFQRREGISNSNSAGGDGDCPLPSPKGWRGCGGDDRDVDRDRTTPPHKIGGAASPTAPIKSISDSGEKQKKEDQDETRSSGRANQDARGYPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNRSGNLSNFYHVIPVGNQGWSSPELPSFPYAAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSESSPMHSPRGRSPHRDPRSPTGATSPFHTKISLETHAVRREGSGHVSVHPLPLPPGVPMPSASIPSMASPSTSMPLQSTPVPSPSIPMPSASSPMASPSTPMASQSTSITQANTKTESTSMKNKWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTWHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVIRDTPPIPETLSYEASDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDASSCSQAVAGASLMDKCYSPSKQYSSKFDQSSMLPSSQNSKGKLAAESVIGLPSRHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNVAGLPPALLAPSIDEHLARVLKYRRKISFMTRSQTQMLRLVELLVWKSTPYWELRNNFVCCFFHFKASVMATSTYPSLVLAWENHHFHSSMYNFKLNL | 879 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29627459 | 29633444 | + | CcPI632755_04g014210.1 | Cco04g1421 | 176646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1421 | 879 | Pfam | Protein kinase domain | 418 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 13 | 39 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 384 | 416 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 136 | 152 | - | - | |
Cco04g1421 | 879 | ProSiteProfiles | Protein kinase domain profile. | 417 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 290 | 416 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 213 | 229 | - | - | |
Cco04g1421 | 879 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 160 | 684 | IPR050538 | - | |
Cco04g1421 | 879 | Gene3D | Transferase(Phosphotransferase) domain 1 | 413 | 717 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 61 | 229 | - | - | |
Cco04g1421 | 879 | SMART | serkin_6 | 417 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 13 | 30 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 170 | 188 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 356 | 371 | - | - | |
Cco04g1421 | 879 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 414 | 715 | - | - | |
Cco04g1421 | 879 | MobiDBLite | consensus disorder prediction | 73 | 93 | - | - | |
Cco04g1421 | 879 | ProSitePatterns | Protein kinases ATP-binding region signature. | 423 | 446 | IPR017441 | GO:0005524(InterPro) | |
Cco04g1421 | 879 | SUPERFAMILY | Protein kinase-like (PK-like) | 400 | 718 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0480 | Cco-Chr1:4710016 | Cco04g1421 | Cco-Chr4:29627459 | 8.90E-97 | dispersed | |
Cco04g1421 | Cco-Chr4:29627459 | Cco05g0981 | Cco-Chr5:8613008 | 2.20E-95 | dispersed | |
Cco04g1421 | Cco-Chr4:29627459 | Cco08g1740 | Cco-Chr8:28648494 | 9.30E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86756 | PF00069 | Pkinase | 2.80E-68 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1421 | - | - | - | 0.0 |