Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1421 ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCTTCAATGGTGAGAATTCCGGGAACTGGTACAGGTGGTGATTCTCCAACCAGAAGGACTACTACCAGAGGCTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGACGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCTGAGCCTGTCTCTTTGTCGCGATCGCCGAGTACTTCTGATGACCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCCCTTATTTCAGCGTCGTGAAGGAATCTCCAATTCGAATTCTGCAGGTGGAGATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGATGCGGTGGGGACGATCGCGATGTAGATAGAGATAGAACTACACCTCCTCATAAGATTGGGGGTGCGGCTTCCCCTACCGCTCCGATTAAAAGTATATCTGATTCCGGGGAAAAGCAGAAGAAAGAAGATCAGGATGAGACAAGGTCATCTGGGAGGGCGAATCAAGATGCAAGAGGATATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGCCCCCAAAGAAATAGGTCCGGTAACCTTTCAAATTTCTATCATGTGATTCCAGTAGGAAACCAAGGCTGGTCTTCACCTGAGCTACCAAGTTTCCCTTATGCTGCTCCAGTTGGAAATCATGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCCTTCTTTGATTGCTCCACTCTTAGTTCTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTACATCTCCATTTCACACCAAGATTTCCCTTGAAACACATGCTGTGCGCCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCCCCTGGAGTGCCAATGCCTTCAGCATCAATCCCATCAATGGCTTCACCATCAACCTCCATGCCTCTACAATCAACCCCTGTGCCTTCCCCATCAATTCCAATGCCTTCAGCGTCATCCCCAATGGCTTCACCATCAACCCCAATGGCTTCACAATCAACCTCAATTACACAAGCTAACACCAAAACGGAGTCGACCTCAATGAAAAATAAATGGCAGAAAGGAAAGCTTATAGGCCGGGGCACATTCGGAAGTGTGTATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGACGATCCGAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCACCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTTGGCACATTCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTTTCTCTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTACTTCTGTCTGTGATGCAGAAAGATAACAGCCCAGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATAAGAGATACCCCACCAATACCTGAAACATTATCATATGAAGCCAGTGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGACCGACCGCTGCAATGCTGCTTGAACATCCATTCATGAAAAACTTGCAGCATCCAGATGCTTCATCTTGCTCTCAGGCCGTTGCTGGGGCAAGTTTGATGGATAAATGCTATAGCCCAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAACTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCTACCATCTCGTCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAATACTGTCTCCTCCGCGCTCGGTTCCAAATGTGCACCATCTCGGTTCCCCTACAAATGTGGCAGGCCTGCCTCCAGCTTTGCTCGCACCTTCAATCGATGAGCATTTGGCAAGGGTGTTAAAGTATCGGCGAAAGATCAGCTTCATGACAAGAAGCCAGACTCAGATGCTGCGTCTAGTAGAGCTTCTGGTCTGGAAGTCTACACCATACTGGGAGTTGAGAAACAATTTTGTATGCTGCTTTTTCCATTTTAAAGCTTCAGTAATGGCGACATCCACTTATCCTTCCTTGGTGTTGGCGTGGGAAAATCACCACTTCCATAGTTCAATGTACAACTTCAAACTGAATTTGTAA 2640 46.82 MRWLRNISFTPSSMVRIPGTGTGGDSPTRRTTTRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERDATSLAKWSDTTPEPVSLSRSPSTSDDHAVPLPLPEVSPLFQRREGISNSNSAGGDGDCPLPSPKGWRGCGGDDRDVDRDRTTPPHKIGGAASPTAPIKSISDSGEKQKKEDQDETRSSGRANQDARGYPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNRSGNLSNFYHVIPVGNQGWSSPELPSFPYAAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSESSPMHSPRGRSPHRDPRSPTGATSPFHTKISLETHAVRREGSGHVSVHPLPLPPGVPMPSASIPSMASPSTSMPLQSTPVPSPSIPMPSASSPMASPSTPMASQSTSITQANTKTESTSMKNKWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTWHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVIRDTPPIPETLSYEASDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDASSCSQAVAGASLMDKCYSPSKQYSSKFDQSSMLPSSQNSKGKLAAESVIGLPSRHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNVAGLPPALLAPSIDEHLARVLKYRRKISFMTRSQTQMLRLVELLVWKSTPYWELRNNFVCCFFHFKASVMATSTYPSLVLAWENHHFHSSMYNFKLNL 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29627459 29633444 + CcPI632755_04g014210.1 Cco04g1421 176646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1421 879 Pfam Protein kinase domain 418 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1421 879 MobiDBLite consensus disorder prediction 13 39 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 384 416 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 136 152 - -
Cco04g1421 879 ProSiteProfiles Protein kinase domain profile. 417 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1421 879 MobiDBLite consensus disorder prediction 290 416 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 213 229 - -
Cco04g1421 879 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 160 684 IPR050538 -
Cco04g1421 879 Gene3D Transferase(Phosphotransferase) domain 1 413 717 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 61 229 - -
Cco04g1421 879 SMART serkin_6 417 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1421 879 MobiDBLite consensus disorder prediction 13 30 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 170 188 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 356 371 - -
Cco04g1421 879 FunFam Mitogen-activated protein kinase kinase kinase 5 414 715 - -
Cco04g1421 879 MobiDBLite consensus disorder prediction 73 93 - -
Cco04g1421 879 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524(InterPro)
Cco04g1421 879 SUPERFAMILY Protein kinase-like (PK-like) 400 718 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0480 Cco-Chr1:4710016 Cco04g1421 Cco-Chr4:29627459 8.90E-97 dispersed
Cco04g1421 Cco-Chr4:29627459 Cco05g0981 Cco-Chr5:8613008 2.20E-95 dispersed
Cco04g1421 Cco-Chr4:29627459 Cco08g1740 Cco-Chr8:28648494 9.30E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86756 PF00069 Pkinase 2.80E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1421 - - - 0.0