Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1423 ATGAAGGATAACTCCTCCAAATATGTTGTTTTCTTGCTTTTAAGCTTCTTTTTCTTGAATCAGCTCCTTGTCTCCTCACAACTTGATTATAGGTTCTATGATGCCTCTTGCCCCAACCTAACGAGGATTATAAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTACGGCTTCATTTTCATGATTGCTTTGTCAACGGTTGTGATGGATCATTGTTGCTTGATGACACTAGCACATTTAGGGGGGAGAAAAATGCATTGCCGAATAGGAACTCAGTTCGAGGCTATGACGTCATTGATAATATAAAGGCTGTCTTAGAGAAAGTCTGCCCATATGTTGTCTCATGTACTGATATAGTAACTCTAGCAGCTAGAGAGGCTGTCTACCTTGCTGGGGGACCATTTTGGCAAATTCCACTTGGTCGCCGAGATGGCACGACAGCAAGCGAGAGTGAAGCCAATCAGCTGCCATCACCAGTTGAGCCATTGGAGAATATCATGGCGAAATTCACTTCGAAAGGGCTTGATTTGAAGGATCTTGTTGCTCTCTCAGGTGCACACACTTTCGGATTTGCTCGGTGCATGATGTTCAAGCACAGGCTGTTCAACTTCGACGGCACTGGAAATCCCGATCCAGAACTCGACGTCATGCTGCGACAGAACTTACAGAGCAATTGTCCAAATCAAGATGACTCCAACAACAGATTTGCCCCCTTGGATGCCTACACGATCTACCGGTTCGACAATGTGTATTACAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCTCTCATGAAAGATAATACAACTGCTTCTTTGGTGGTGAACTACAGCAGGTATCCATATCTGTTTTACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGGATCCTTACAGGCCAAAATGGGGAGATTAGGAAGAATTGCAGGATGGTGAACTAG 984 44.92 MKDNSSKYVVFLLLSFFFLNQLLVSSQLDYRFYDASCPNLTRIIRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSTFRGEKNALPNRNSVRGYDVIDNIKAVLEKVCPYVVSCTDIVTLAAREAVYLAGGPFWQIPLGRRDGTTASESEANQLPSPVEPLENIMAKFTSKGLDLKDLVALSGAHTFGFARCMMFKHRLFNFDGTGNPDPELDVMLRQNLQSNCPNQDDSNNRFAPLDAYTIYRFDNVYYRNLVNKLGLLQSDQALMKDNTTASLVVNYSRYPYLFYRDFGASMVKLANTGILTGQNGEIRKNCRMVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29638604 29640083 + CcPI632755_04g014230.1 Cco04g1423 176648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1423 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Cco04g1423 327 Gene3D Peroxidase, domain 2 164 306 - -
Cco04g1423 327 FunFam Peroxidase 164 306 - -
Cco04g1423 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 PANTHER PEROXIDASE 72-RELATED 16 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 FunFam Peroxidase 31 179 - -
Cco04g1423 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cco04g1423 327 Pfam Peroxidase 48 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco04g1423 327 Gene3D - 31 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2522 Cco-Chr2:37558035 Cco04g1423 Cco-Chr4:29638604 2.10E-88 dispersed
Cco04g1423 Cco-Chr4:29638604 Cco11g0594 Cco-Chr11:6349590 1.20E-88 dispersed
Cco06g0102 Cco-Chr6:967788 Cco04g1423 Cco-Chr4:29638604 7.40E-52 transposed
Cco02g2014 Cco-Chr2:33119208 Cco04g1423 Cco-Chr4:29638604 5.70E-71 wgd
Cco04g1423 Cco-Chr4:29638604 Cco09g1962 Cco-Chr9:33655216 1.30E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1423 K00430 - csv:101218459 613.994