Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1445 | ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACAATCAATTTCGCCACGCCTTCCAATAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCTCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGACAGAATACAGAGCCGCGGTGGTCGGCTACCGGAATTTGAGGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGTAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAACGATAACGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAAAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACATCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGCGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA | 1074 | 47.58 | MEWVRGDEIGHGSFATINFATPSNNTYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEKGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29883571 | 29884644 | + | CcPI632755_04g014450.1 | Cco04g1445 | 176670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1445 | 357 | Gene3D | Transferase(Phosphotransferase) domain 1 | 97 | 318 | - | - | |
Cco04g1445 | 357 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 39 | IPR017441 | GO:0005524(InterPro) | |
Cco04g1445 | 357 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco04g1445 | 357 | ProSiteProfiles | Protein kinase domain profile. | 3 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1445 | 357 | CDD | STKc_MAPKKK | 2 | 274 | - | - | |
Cco04g1445 | 357 | Pfam | Protein kinase domain | 5 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1445 | 357 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 96 | - | - | |
Cco04g1445 | 357 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 299 | IPR011009 | - | |
Cco04g1445 | 357 | SMART | serkin_6 | 3 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco04g1445 | 357 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 275 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0207 | Cco-Chr2:2013284 | Cco04g1445 | Cco-Chr4:29883571 | 8.30E-55 | dispersed | |
Cco04g1445 | Cco-Chr4:29883571 | Cco09g1096 | Cco-Chr9:10472057 | 8.30E-62 | dispersed | |
Cco02g1334 | Cco-Chr2:25275236 | Cco04g1445 | Cco-Chr4:29883571 | 3.10E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86758 | PF00069 | Pkinase | 1.60E-54 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1445 | - | - | - | 0.0 |