Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1445 ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACAATCAATTTCGCCACGCCTTCCAATAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCTCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGACAGAATACAGAGCCGCGGTGGTCGGCTACCGGAATTTGAGGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGTAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAACGATAACGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAAAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACATCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGCGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA 1074 47.58 MEWVRGDEIGHGSFATINFATPSNNTYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEKGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29883571 29884644 + CcPI632755_04g014450.1 Cco04g1445 176670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1445 357 Gene3D Transferase(Phosphotransferase) domain 1 97 318 - -
Cco04g1445 357 ProSitePatterns Protein kinases ATP-binding region signature. 9 39 IPR017441 GO:0005524(InterPro)
Cco04g1445 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1445 357 ProSiteProfiles Protein kinase domain profile. 3 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1445 357 CDD STKc_MAPKKK 2 274 - -
Cco04g1445 357 Pfam Protein kinase domain 5 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1445 357 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Cco04g1445 357 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cco04g1445 357 SMART serkin_6 3 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1445 357 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 275 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0207 Cco-Chr2:2013284 Cco04g1445 Cco-Chr4:29883571 8.30E-55 dispersed
Cco04g1445 Cco-Chr4:29883571 Cco09g1096 Cco-Chr9:10472057 8.30E-62 dispersed
Cco02g1334 Cco-Chr2:25275236 Cco04g1445 Cco-Chr4:29883571 3.10E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86758 PF00069 Pkinase 1.60E-54 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1445 - - - 0.0