Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1449 ATGGACCATTCCATTCCCAACAACTGCGATGGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGCCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTCCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCTGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTCGGTGAAGAAAACAGGTCAATGTCCTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGTATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATAATATATCGGCGCCTCCTGATTTACAAGGATTAAGGAATTGCGTCTCAGTGGAACCAAGCATCATAGAAGGAAATCGGTCAGGTGTGCTTCTAAATTACACTCCAGAGCACAGCCTTGTATTCCCTTCCCCTCTTAGTGGGGAAATTGGATTGGATGGGGTTTCTGAAGTGTTGATGACATCTAAGACATCAATCTTCGTGGCGTGGAGCTTGAGGCTGAGAATGATGAATTTTAATGAGTGCCATTTCTCACATGGCGGGGCAGAGTTTGTAAAGAAGACCTCTGTACCCGCCTCTGATGTGACCACCGACTATAAATTTATCCTTTCAATTCTTTTTGGCTCCATGGCCGATCAGCTCTCTAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCCGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTTTGGATTGCTTCTAAACGCTCCCGCAAGAAGATTTCTCACAGACCCACTATCCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAGTCGATCATGCCCTCGCTCAAAACCAAGAACATAAGCCGAGTAGGTCCCATTTTCAGGTCGACCCACTTCCGGAGCCGGAACCAATCCCTGGAATTGAGCGGCAGGCTTTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATCGGGAAAGATCATAGGATTTCATATCCTGAGCGCCTTGGTCGGTCGTCTTCCTCACAGGGGAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGACACTGGTACACTCTCAGAGAGCTTGAAGCTTCGACTAATGGTTTCGCCCCCGACAATGTAATTGGCGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAAGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTTAGACATAAGAACTTAGTTAGACTGCTTGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATCCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTGTGCTCTGATAATAGTTATATTACAACCCGAGTAATGGGGACATTTGGCTATGTAGCACCAGAATATGCAAGTACAGGAATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGACGTAATCCCGTCGAGTATAGTCGTCCTCCCGATGAGGTGAACTTGATCGATTGGCTCAAGAGAATGGTCACTAACCAAAATCCAGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTACTTGTTGCATTACGCTGCGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGACATATTATTCATATGCTTGAAGCCGAAGATGCTAACTTTAAAGGGGATCGTAAAGCTGGAAAGGACCCAGAGAATTCACATTCAAACAATGTCAAAGATGGTTTAAATGAAAGGCAGGCAACAGAATTAGGTGGCAGCAGTGTCGATGGACTCGTCCTTATACCATTGATACCTTATACCATTGAAGATAAAATCAATTCATGTCTCCGTCGATGCCCCTCCCAAGACGGTCTTTTCAGAGGAGGAGGTAACCAACAAACTGGTTATCAGTATGATCGGAGGGAAGGGAGACAATCGGAATAA 3042 46.19 MDHSIPNNCDGNACTSSTWTLPTAAASSSSPPDDISLFLQQILLRSSSSAPHSSLLSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSMSSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMYVSQSETTPFMSHPYNISAPPDLQGLRNCVSVEPSIIEGNRSGVLLNYTPEHSLVFPSPLSGEIGLDGVSEVLMTSKTSIFVAWSLRLRMMNFNECHFSHGGAEFVKKTSVPASDVTTDYKFILSILFGSMADQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRVDHALAQNQEHKPSRSHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVEYSRPPDEVNLIDWLKRMVTNQNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSNNVKDGLNERQATELGGSSVDGLVLIPLIPYTIEDKINSCLRRCPSQDGLFRGGGNQQTGYQYDRREGRQSE 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29903922 29912437 - CcPI632755_04g014490.1 Cco04g1449 176674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1449 1013 Pfam Protein kinase domain 652 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1449 1013 SUPERFAMILY Protein kinase-like (PK-like) 629 920 IPR011009 -
Cco04g1449 1013 FunFam Basic helix-loop-helix transcription factor 167 230 - -
Cco04g1449 1013 MobiDBLite consensus disorder prediction 989 1013 - -
Cco04g1449 1013 Coils Coil 211 231 - -
Cco04g1449 1013 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Cco04g1449 1013 MobiDBLite consensus disorder prediction 168 184 - -
Cco04g1449 1013 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983(InterPro)
Cco04g1449 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco04g1449 1013 MobiDBLite consensus disorder prediction 928 949 - -
Cco04g1449 1013 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Cco04g1449 1013 FunFam Probable serine/threonine-protein kinase At1g01540 628 723 - -
Cco04g1449 1013 MobiDBLite consensus disorder prediction 98 114 - -
Cco04g1449 1013 Gene3D Transferase(Phosphotransferase) domain 1 724 934 - -
Cco04g1449 1013 SMART serkin_6 648 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1449 1013 FunFam Putative receptor-like serine/threonine-protein kinase 724 934 - -
Cco04g1449 1013 MobiDBLite consensus disorder prediction 98 184 - -
Cco04g1449 1013 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524(InterPro)
Cco04g1449 1013 Gene3D - 167 231 IPR036638 GO:0046983(InterPro)
Cco04g1449 1013 CDD STKc_IRAK 654 920 - -
Cco04g1449 1013 CDD bHLH_AtPIF_like 172 234 IPR047265 -
Cco04g1449 1013 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Cco04g1449 1013 Gene3D Phosphorylase Kinase; domain 1 629 723 - -
Cco04g1449 1013 ProSiteProfiles Protein kinase domain profile. 648 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco04g1449 1013 PANTHER OS01G0323000 PROTEIN 471 946 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1449 Cco-Chr4:29903922 Cco05g0170 Cco-Chr5:1351734 4.20E-167 dispersed
Cco08g1792 Cco-Chr8:29054026 Cco04g1449 Cco-Chr4:29903922 8.00E-39 dispersed
Cco10g1016 Cco-Chr10:21824618 Cco04g1449 Cco-Chr4:29903922 5.80E-10 dispersed
Cco10g1712 Cco-Chr10:30666634 Cco04g1449 Cco-Chr4:29903922 2.50E-08 dispersed
Cco11g1711 Cco-Chr11:29928241 Cco04g1449 Cco-Chr4:29903922 3.10E-23 dispersed
Cco08g1791 Cco-Chr8:29047106 Cco04g1449 Cco-Chr4:29903922 1.00E-201 transposed
Cco11g1560 Cco-Chr11:28491452 Cco04g1449 Cco-Chr4:29903922 4.10E-23 transposed
Cco04g1449 Cco-Chr4:29903922 Cco05g2262 Cco-Chr5:31350406 5.70E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59073 PF00069 Pkinase 8.40E-47 CL0016 Cco TF
86759 PF00069 Pkinase 8.40E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1449 - - - 0.0