Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco04g1452 | ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCATAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCCCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTAGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACCATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCGGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGCCACAGACGGCGGTTGGCGCAGCAGATCAGCCGAACTCCCAGATATTGCTTCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTAGCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA | 1482 | 48.65 | MWDLNDWPDVREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAHNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRPQTAVGAADQPNSQILLHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLALNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 29944712 | 29947232 | - | CcPI632755_04g014520.1 | Cco04g1452 | 176677 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco04g1452 | 493 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 40 | 355 | - | - | |
Cco04g1452 | 493 | PRINTS | Ethylene responsive element binding protein signature | 227 | 238 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | PRINTS | Ethylene responsive element binding protein signature | 265 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | Pfam | AP2 domain | 134 | 182 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | Pfam | AP2 domain | 225 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | Gene3D | AP2/ERF domain | 225 | 284 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | Gene3D | AP2/ERF domain | 133 | 192 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | FunFam | AP2-like ethylene-responsive transcription factor | 225 | 285 | - | - | |
Cco04g1452 | 493 | CDD | AP2 | 134 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | SUPERFAMILY | DNA-binding domain | 133 | 191 | IPR016177 | GO:0003677(InterPro) | |
Cco04g1452 | 493 | CDD | AP2 | 225 | 285 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | SMART | rav1_2 | 134 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | SMART | rav1_2 | 226 | 289 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | FunFam | AP2-like ethylene-responsive transcription factor | 133 | 192 | - | - | |
Cco04g1452 | 493 | MobiDBLite | consensus disorder prediction | 290 | 335 | - | - | |
Cco04g1452 | 493 | ProSiteProfiles | AP2/ERF domain profile. | 226 | 283 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | ProSiteProfiles | AP2/ERF domain profile. | 134 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco04g1452 | 493 | MobiDBLite | consensus disorder prediction | 106 | 134 | - | - | |
Cco04g1452 | 493 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
Cco04g1452 | 493 | SUPERFAMILY | DNA-binding domain | 225 | 285 | IPR016177 | GO:0003677(InterPro) | |
Cco04g1452 | 493 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cco04g1452 | 493 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2225 | Cco-Chr2:34853474 | Cco04g1452 | Cco-Chr4:29944712 | 4.60E-92 | dispersed | |
Cco04g1079 | Cco-Chr4:26261938 | Cco04g1452 | Cco-Chr4:29944712 | 3.80E-85 | dispersed | |
Cco04g1452 | Cco-Chr4:29944712 | Cco10g2053 | Cco-Chr10:33922839 | 4.50E-90 | dispersed | |
Cco02g1325 | Cco-Chr2:25069312 | Cco04g1452 | Cco-Chr4:29944712 | 3.60E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59074 | PF00847 | AP2 | 3.30E-10 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco04g1452 | K09284 | - | csv:101214724 | 771.926 |