Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco04g1452 ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCATAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCCCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTAGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACCATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCGGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGCCACAGACGGCGGTTGGCGCAGCAGATCAGCCGAACTCCCAGATATTGCTTCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTAGCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA 1482 48.65 MWDLNDWPDVREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAHNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRPQTAVGAADQPNSQILLHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLALNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29944712 29947232 - CcPI632755_04g014520.1 Cco04g1452 176677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco04g1452 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 355 - -
Cco04g1452 493 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 Pfam AP2 domain 134 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 Pfam AP2 domain 225 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 FunFam AP2-like ethylene-responsive transcription factor 225 285 - -
Cco04g1452 493 CDD AP2 134 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677(InterPro)
Cco04g1452 493 CDD AP2 225 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 SMART rav1_2 134 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 SMART rav1_2 226 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 FunFam AP2-like ethylene-responsive transcription factor 133 192 - -
Cco04g1452 493 MobiDBLite consensus disorder prediction 290 335 - -
Cco04g1452 493 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco04g1452 493 MobiDBLite consensus disorder prediction 106 134 - -
Cco04g1452 493 MobiDBLite consensus disorder prediction 48 62 - -
Cco04g1452 493 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677(InterPro)
Cco04g1452 493 MobiDBLite consensus disorder prediction 1 35 - -
Cco04g1452 493 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2225 Cco-Chr2:34853474 Cco04g1452 Cco-Chr4:29944712 4.60E-92 dispersed
Cco04g1079 Cco-Chr4:26261938 Cco04g1452 Cco-Chr4:29944712 3.80E-85 dispersed
Cco04g1452 Cco-Chr4:29944712 Cco10g2053 Cco-Chr10:33922839 4.50E-90 dispersed
Cco02g1325 Cco-Chr2:25069312 Cco04g1452 Cco-Chr4:29944712 3.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59074 PF00847 AP2 3.30E-10 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco04g1452 K09284 - csv:101214724 771.926